JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
THG1L_chr5_157726420_157746449	0/0	c0004	897	6	3	3	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	c0005	897	1	0	0	1	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	c0006	897	1	1	0	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THNSL1_chr10_25011612_25031664	1/0	c0001	2232	198	32	34	89	13	29	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	c0002	2232	122	2	22	83	2	13	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	c0003	2232	46	40	6	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	c0004	2232	13	10	3	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	c0005	2232	7	1	1	0	1	4	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	c0006	2232	5	5	0	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	c0007	2232	4	4	0	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/1	c0008	2232	4	1	2	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	c0009	2232	2	0	0	0	0	2	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	c0010	2232	2	0	0	2	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	c0011	2232	2	0	0	2	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	c0012	2232	1	1	0	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	c0013	2232	1	1	0	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	c0014	2232	1	1	0	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	c0015	2232	1	0	0	1	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	c0016	2232	1	0	0	1	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	c0017	2232	1	0	0	1	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	c0018	2232	1	0	0	1	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL2_chr2_88165346_88191627	0/1	c0001	1455	22	2	6	5	6	2	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	1/0	c0002	1455	14	1	6	2	2	2	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	c0003	1455	5	0	3	2	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	c0004	1455	2	0	0	0	1	1	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	c0005	1455	2	0	2	0	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	c0006	1455	1	0	0	0	0	1	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	c0007	1406	1	0	0	0	1	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	c0008	1455	1	0	1	0	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	c0009	1382	1	1	0	0	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	c0010	1455	1	0	1	0	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	c0011	1455	1	0	1	0	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	c0012	1455	1	0	0	1	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	c0013	1455	1	0	1	0	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	c0014	1455	1	0	1	0	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THOC1_chr18_209520_273047	0/1	c0001	1974	293	73	60	104	14	41	copy fasta	THOC1	chr18	209520	273047
THOC1_chr18_209520_273047	0/0	c0002	1974	55	0	5	50	0	0	copy fasta	THOC1	chr18	209520	273047
THOC1_chr18_209520_273047	1/0	c0003	1974	24	21	2	0	0	0	copy fasta	THOC1	chr18	209520	273047
THOC1_chr18_209520_273047	0/0	c0004	1974	1	0	0	0	0	1	copy fasta	THOC1	chr18	209520	273047
THOC1_chr18_209520_273047	0/0	c0005	1974	1	0	1	0	0	0	copy fasta	THOC1	chr18	209520	273047
THOC1_chr18_209520_273047	0/0	c0006	1974	1	0	0	1	0	0	copy fasta	THOC1	chr18	209520	273047
THOC1_chr18_209520_273047	0/0	c0007	1974	1	0	0	1	0	0	copy fasta	THOC1	chr18	209520	273047
THOC2_chrX_123595569_123738052	1/1	c0001	4782	244	68	46	91	11	26	copy fasta	THOC2	chrX	123595569	123738052
THOC2_chrX_123595569_123738052	0/0	c0002	4782	1	1	0	0	0	0	copy fasta	THOC2	chrX	123595569	123738052
THOC2_chrX_123595569_123738052	0/0	c0003	4782	1	0	0	1	0	0	copy fasta	THOC2	chrX	123595569	123738052
THOC2_chrX_123595569_123738052	0/0	c0004	4782	1	0	0	1	0	0	copy fasta	THOC2	chrX	123595569	123738052
THOC2_chrX_123595569_123738052	0/0	c0005	4782	1	0	1	0	0	0	copy fasta	THOC2	chrX	123595569	123738052
THOC2_chrX_123595569_123738052	0/0	c0006	4782	1	1	0	0	0	0	copy fasta	THOC2	chrX	123595569	123738052
THOC2_chrX_123595569_123738052	0/0	c0007	4782	1	0	0	1	0	0	copy fasta	THOC2	chrX	123595569	123738052
THOC2_chrX_123595569_123738052	0/0	c0008	4781	1	0	0	1	0	0	copy fasta	THOC2	chrX	123595569	123738052