JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
THOC3_chr5_175954531_175973315	1/0	c0001	1056	124	34	24	58	2	5	copy fasta	THOC3	chr5	175954531	175973315
THOC3_chr5_175954531_175973315	0/0	c0002	1056	89	15	17	48	3	6	copy fasta	THOC3	chr5	175954531	175973315
THOC3_chr5_175954531_175973315	0/0	c0003	1056	38	7	12	11	5	3	copy fasta	THOC3	chr5	175954531	175973315
THOC3_chr5_175954531_175973315	0/0	c0004	1056	5	0	1	4	0	0	copy fasta	THOC3	chr5	175954531	175973315
THOC3_chr5_175954531_175973315	0/0	c0005	1056	1	0	0	1	0	0	copy fasta	THOC3	chr5	175954531	175973315
THOC3_chr5_175954531_175973315	0/0	c0006	1056	1	0	0	1	0	0	copy fasta	THOC3	chr5	175954531	175973315
THOC3_chr5_175954531_175973315	0/0	c0007	1056	1	0	0	1	0	0	copy fasta	THOC3	chr5	175954531	175973315
THOC5_chr22_29500879_29558757	1/1	c0001	2052	179	51	36	55	10	25	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	c0002	2052	87	18	20	40	4	5	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	c0003	2052	54	1	4	46	0	3	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	c0004	2052	40	10	7	17	1	5	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	c0005	2052	13	12	0	0	0	1	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	c0006	2052	5	1	0	2	0	2	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	c0007	2052	1	1	0	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	c0008	2052	1	0	0	1	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	c0009	2052	1	0	0	0	1	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	c0010	2052	1	0	1	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	c0011	2052	1	0	0	0	0	1	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	c0012	2052	1	0	0	1	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC6_chr16_3019035_3032750	1/1	c0001	1026	368	75	68	164	16	43	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	c0002	1026	14	14	0	0	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	c0003	1026	5	0	4	0	0	1	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	c0004	1026	2	0	0	2	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	c0005	1026	1	0	0	1	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	c0006	1026	1	1	0	0	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	c0007	1026	1	0	0	1	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	c0008	1026	1	1	0	0	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	c0009	1026	1	1	0	0	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	c0010	1026	1	1	0	0	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	c0011	1026	1	1	0	0	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC7_chr3_63828870_63868805	1/1	c0001	615	373	90	62	168	14	37	copy fasta	THOC7	chr3	63828870	63868805
THOC7_chr3_63828870_63868805	0/0	c0002	615	1	0	0	0	0	1	copy fasta	THOC7	chr3	63828870	63868805
THOP1_chr19_2780503_2820807	1/1	c0001	2070	323	68	51	150	14	38	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0002	2065	18	9	3	0	3	3	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0003	2070	7	7	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0004	2070	4	0	0	4	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0005	2070	2	0	2	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0006	2055	2	2	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0007	2055	2	2	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0008	2199	2	0	2	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0009	2242	1	0	0	1	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0010	2156	1	0	0	0	1	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0011	2070	1	0	0	0	0	1	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0012	2070	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0013	2070	1	0	0	1	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0014	2065	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0015	2065	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0016	2070	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0017	2070	1	0	0	1	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	c0018	2070	1	0	0	1	0	0	copy fasta	THOP1	chr19	2780503	2820807