JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
THPO_chr3_184366935_184383207	1/1	c0001	1062	426	92	86	186	16	44	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	c0002	1062	2	0	0	2	0	0	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	c0003	1062	2	2	0	0	0	0	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	c0004	1062	1	1	0	0	0	0	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	c0005	1062	1	0	0	1	0	0	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	c0006	1062	1	0	0	1	0	0	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	c0007	1062	1	0	0	1	0	0	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	c0008	1062	1	0	0	1	0	0	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	c0009	1062	1	1	0	0	0	0	copy fasta	THPO	chr3	184366935	184383207
THRAP3_chr1_36219443_36310357	0/0	c0001	2868	113	29	27	36	5	16	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	c0002	2868	42	5	13	10	3	11	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	1/1	c0003	2868	34	18	5	2	2	5	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	c0004	2868	19	15	4	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	c0005	2868	18	18	0	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	c0006	2868	17	0	3	14	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	c0007	2868	4	4	0	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	c0008	2868	1	0	0	1	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	c0009	2868	1	1	0	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	c0010	2868	1	0	1	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	c0011	2868	1	0	1	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	c0012	2868	1	0	0	1	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRA_chr17_40057965_40098002	1/1	c0001	1233	340	83	67	133	14	41	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	c0002	1233	10	5	2	0	0	3	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	c0003	1233	4	0	0	4	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	c0004	1233	3	2	1	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	c0005	1225	1	0	0	1	0	0	copy fasta	THRA	chr17	40057965	40098002
THRB_chr3_24112153_24499850	1/1	c0001	1386	146	61	28	37	5	13	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	c0002	1386	28	13	10	3	1	1	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	c0003	1386	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	c0004	885	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	c0005	1386	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	c0006	1386	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRSP_chr11_78058861_78073351	1/1	c0001	441	396	87	63	187	16	41	copy fasta	THRSP	chr11	78058861	78073351
THRSP_chr11_78058861_78073351	0/0	c0002	441	5	5	0	0	0	0	copy fasta	THRSP	chr11	78058861	78073351
THRSP_chr11_78058861_78073351	0/0	c0003	441	4	0	4	0	0	0	copy fasta	THRSP	chr11	78058861	78073351
THRSP_chr11_78058861_78073351	0/0	c0004	441	2	0	0	1	0	1	copy fasta	THRSP	chr11	78058861	78073351
THRSP_chr11_78058861_78073351	0/0	c0005	441	1	0	1	0	0	0	copy fasta	THRSP	chr11	78058861	78073351
THSD1_chr13_52372167_52411172	0/0	c0001	2559	146	23	36	71	4	12	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	1/1	c0002	2559	123	29	19	51	5	17	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0003	2559	7	0	1	4	0	2	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0004	2559	6	4	1	0	0	1	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0005	2559	4	3	1	0	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0006	2559	4	4	0	0	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0007	2559	3	0	0	3	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0008	2559	3	0	0	3	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0009	2559	3	3	0	0	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0010	2559	2	0	0	0	0	2	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0011	2559	2	2	0	0	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0012	2559	2	0	0	2	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0013	2559	2	0	0	1	0	1	copy fasta	THSD1	chr13	52372167	52411172