JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
THSD1_chr13_52372167_52411172	0/0	c0014	2559	2	0	0	2	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0015	2559	1	0	0	0	0	1	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0016	2559	1	0	0	1	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0017	2559	1	1	0	0	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0018	2559	1	1	0	0	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0019	2559	1	1	0	0	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0020	2559	1	1	0	0	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	c0021	2559	1	0	0	0	1	0	copy fasta	THSD1	chr13	52372167	52411172
THSD4_chr15_71110471_71788383	0/0	c0001	3057	42	23	9	1	2	7	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0002	3057	20	6	5	5	0	4	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0003	3057	10	6	2	0	0	2	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0004	3057	9	3	2	1	1	2	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0005	3057	8	5	3	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0006	3057	5	3	1	0	0	1	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0007	3057	3	2	0	0	0	1	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0008	3057	3	3	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0009	3057	2	0	0	0	1	1	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0010	3057	2	0	1	1	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0011	3057	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0012	3057	1	0	1	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0013	3057	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0014	3057	1	0	1	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0015	3057	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0016	3057	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0017	3057	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0018	3057	1	0	1	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0019	3057	1	0	1	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0020	3057	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0021	3057	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	c0022	3057	1	0	1	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD7A_chr7_11365365_11837198	0/0	c0001	4974	30	14	5	8	1	2	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0002	4974	21	13	3	4	1	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/1	c0003	4974	12	4	3	4	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	1/0	c0004	4974	8	0	1	6	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0005	4974	6	2	1	3	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0006	4974	6	0	1	5	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0007	4974	6	1	2	3	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0008	4974	5	2	1	2	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0009	4974	5	3	0	0	0	2	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0010	4974	4	3	1	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0011	4974	3	1	1	0	0	1	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0012	4974	3	2	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0013	4974	3	0	1	2	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0014	4974	3	1	0	2	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0015	4974	3	0	0	1	1	1	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0016	4974	2	1	1	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0017	4974	2	0	1	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0018	4974	2	1	1	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0019	4974	2	0	2	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0020	4974	2	1	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198