JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BBOF1_chr14_74014349_74071092	0/0	c0018	1298	1	0	0	0	0	1	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	c0019	1590	1	0	0	1	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOX1_chr11_27035815_27132809	1/1	c0001	1164	213	24	45	111	7	24	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	c0002	1164	60	40	7	5	0	8	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	c0003	1164	23	6	7	0	5	5	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	c0004	1164	8	8	0	0	0	0	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	c0005	1164	6	6	0	0	0	0	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	c0006	1164	5	0	1	0	2	2	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	c0007	1164	1	1	0	0	0	0	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	c0008	1164	1	0	0	0	0	1	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	c0009	1164	1	1	0	0	0	0	copy fasta	BBOX1	chr11	27035815	27132809
BBS10_chr12_76339474_76353415	1/1	c0001	2172	376	83	71	166	14	40	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	c0002	2172	24	0	0	24	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	c0003	2172	7	0	3	0	0	4	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	c0004	2172	2	1	1	0	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	c0005	2172	1	0	0	1	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	c0006	2172	1	1	0	0	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	c0007	2172	1	0	1	0	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	c0008	2172	1	1	0	0	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	c0009	2172	1	1	0	0	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	c0010	2172	1	0	0	1	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	c0011	2172	1	1	0	0	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS12_chr4_122727704_122749939	0/0	c0001	2133	131	12	24	79	3	13	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	1/1	c0002	2133	127	18	27	58	5	17	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0003	2133	23	8	7	0	3	5	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0004	2133	18	14	4	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0005	2133	12	10	2	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0006	2133	10	9	1	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0007	2133	9	8	1	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0008	2133	5	0	0	5	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0009	2133	5	5	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0010	2133	4	4	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0011	2133	2	2	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0012	2133	2	0	0	1	0	1	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0013	2133	2	2	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0014	2133	1	0	1	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0015	2167	1	1	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0016	2133	1	1	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0017	2133	1	1	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0018	2133	1	0	1	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0019	2133	1	0	0	1	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0020	2133	1	1	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0021	2133	1	0	1	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0022	2133	1	1	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0023	2133	1	0	0	1	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0024	2133	1	0	0	0	1	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0025	2133	1	0	0	1	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0026	2133	1	1	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	c0027	2133	1	0	1	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS1_chr11_66505635_66538598	1/1	c0001	1782	259	62	39	111	11	34	copy fasta	BBS1	chr11	66505635	66538598