JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
THSD7A_chr7_11365365_11837198	0/0	c0071	4962	1	0	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	c0072	4962	1	0	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7B_chr2_136760545_137682718	0/0	c0001	4821	11	5	0	3	1	2	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/1	c0002	4821	9	4	3	0	0	1	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	1/0	c0003	4821	7	1	1	3	0	1	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0004	4821	4	3	0	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0005	4821	4	1	1	1	0	1	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0006	4821	3	2	0	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0007	4821	3	0	2	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0008	4821	2	0	1	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0009	4821	2	2	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0010	4821	2	2	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0011	4821	2	2	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0012	4821	2	2	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0013	4821	2	2	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0014	4821	2	2	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0015	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0016	4821	1	0	0	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0017	4821	1	0	0	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0018	4821	1	0	0	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0019	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0020	4821	1	0	0	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0021	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0022	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0023	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0024	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0025	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0026	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0027	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0028	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0029	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0030	4821	1	0	1	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0031	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0032	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0033	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0034	4821	1	0	1	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0035	4821	1	0	1	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0036	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0037	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0038	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0039	4821	1	0	1	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0040	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0041	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0042	4821	1	0	0	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0043	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0044	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0045	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0046	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0047	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0048	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718