JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
THSD7B_chr2_136760545_137682718	0/0	c0049	4821	1	0	0	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0050	4821	1	0	0	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0051	4821	1	0	0	0	1	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0052	4821	1	0	0	0	0	1	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0053	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0054	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0055	4821	1	0	0	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0056	4821	1	0	0	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	c0057	4821	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD8_chr19_12797069_12809389	1/0	c0001	348	381	62	67	192	18	41	copy fasta	THSD8	chr19	12797069	12809389
THSD8_chr19_12797069_12809389	0/1	c0002	348	24	19	4	0	0	0	copy fasta	THSD8	chr19	12797069	12809389
THSD8_chr19_12797069_12809389	0/0	c0003	348	9	9	0	0	0	0	copy fasta	THSD8	chr19	12797069	12809389
THSD8_chr19_12797069_12809389	0/0	c0004	348	2	2	0	0	0	0	copy fasta	THSD8	chr19	12797069	12809389
THSD8_chr19_12797069_12809389	0/0	c0005	348	1	0	0	0	0	1	copy fasta	THSD8	chr19	12797069	12809389
THSD8_chr19_12797069_12809389	0/0	c0006	348	1	1	0	0	0	0	copy fasta	THSD8	chr19	12797069	12809389
THSD8_chr19_12797069_12809389	0/0	c0007	348	1	1	0	0	0	0	copy fasta	THSD8	chr19	12797069	12809389
THSD8_chr19_12797069_12809389	0/0	c0008	348	1	0	1	0	0	0	copy fasta	THSD8	chr19	12797069	12809389
THTPA_chr14_23551271_23565271	1/0	c0001	693	321	96	54	127	12	31	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/1	c0002	693	81	2	14	51	4	9	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	c0003	693	2	2	0	0	0	0	copy fasta	THTPA	chr14	23551271	23565271
THUMPD1_chr16_20728664_20746818	1/1	c0001	1062	350	81	63	158	13	33	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	c0002	1062	56	8	4	34	1	9	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	c0003	1062	2	2	0	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	c0004	1062	1	0	1	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	c0005	1062	1	1	0	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD2_chr2_39731061_39784258	1/1	c0001	1512	309	82	57	125	11	32	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	c0002	1512	7	0	0	7	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	c0003	1509	6	6	0	0	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	c0004	1512	3	2	0	1	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	c0005	1512	3	0	0	0	0	3	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	c0006	1512	2	2	0	0	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	c0007	1512	2	2	0	0	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	c0008	1512	1	0	0	0	1	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	c0009	1512	1	0	0	1	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	c0010	1512	1	0	0	1	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	c0011	1512	1	0	1	0	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	c0012	1512	1	0	0	0	0	1	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	c0013	1512	1	0	0	1	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD3_chr3_9358054_9391791	0/1	c0001	1524	197	49	39	81	5	22	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	1/0	c0002	1524	131	38	12	66	5	9	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	c0003	1524	34	1	11	14	2	6	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	c0004	1524	3	0	2	0	0	1	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	c0005	1524	2	1	1	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	c0006	1524	2	0	0	2	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	c0007	1524	2	2	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	c0008	1524	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	c0009	1524	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	c0010	1524	1	0	0	1	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	c0011	1524	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	c0012	1524	1	1	0	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791