JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TIAM1_chr21_31113418_31349261	0/0	c0009	4776	2	2	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0010	4776	2	2	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0011	4776	1	0	0	0	0	1	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0012	4776	1	0	0	0	0	1	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0013	4776	1	0	0	1	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0014	4776	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0015	4776	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0016	4776	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0017	4776	1	0	0	1	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0018	4776	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0019	4776	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0020	4776	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/1	c0021	4776	1	0	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0022	4776	1	0	1	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0023	4776	1	0	1	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0024	4776	1	0	0	1	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0025	4776	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0026	4776	1	0	0	1	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0027	4776	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	c0028	4776	1	0	0	1	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM2_chr6_154990315_155262723	0/0	c0001	5106	48	10	18	13	2	5	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0002	5106	46	14	5	16	2	9	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0003	5106	27	3	10	12	0	2	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0004	5106	10	6	3	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0005	5106	9	9	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0006	5106	6	0	4	1	1	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0007	5106	5	0	5	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0008	5106	4	1	3	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0009	5106	4	4	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0010	5106	3	2	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0011	5106	3	0	0	2	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0012	5106	3	3	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0013	5106	3	0	0	3	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0014	5106	2	0	0	0	0	2	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0015	5106	2	1	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0016	5106	2	2	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0017	5106	2	0	0	2	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0018	5106	2	0	2	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0019	5106	2	2	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0020	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0021	5106	1	0	0	1	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0022	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0023	5106	1	0	0	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0024	5106	1	0	0	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0025	5106	1	0	0	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0026	5106	1	0	0	1	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0027	5106	1	0	0	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0028	5106	1	0	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0029	5106	1	0	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0030	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723