JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TIAM2_chr6_154990315_155262723	0/0	c0031	5106	1	0	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0032	5106	1	0	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0033	5106	1	0	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0034	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0035	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0036	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0037	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0038	5106	1	0	0	1	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0039	5106	1	0	0	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/1	c0040	5106	1	0	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0041	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0042	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0043	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0044	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0045	5090	1	0	0	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0046	5106	1	0	0	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0047	5106	1	0	0	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0048	5106	1	0	0	1	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0049	5106	1	0	0	1	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0050	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0051	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0052	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0053	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0054	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0055	5106	1	0	0	1	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0056	5106	1	0	0	1	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0057	5106	1	0	0	0	1	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0058	5106	1	0	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	1/0	c0059	5106	1	0	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0060	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0061	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0062	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0063	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0064	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0065	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	c0066	5106	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TICAM1_chr19_4810932_4836712	0/0	c0001	2139	136	10	25	79	7	15	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0002	2139	97	50	17	15	5	10	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	1/0	c0003	2139	92	4	22	50	1	14	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/1	c0004	2142	61	29	11	10	3	7	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0005	2139	7	0	0	7	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0006	2139	3	0	0	3	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0007	2139	2	2	0	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0008	2139	1	0	0	1	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0009	2139	1	0	0	1	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0010	2142	1	0	0	1	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0011	2139	1	0	0	0	0	1	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0012	2139	1	0	0	1	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0013	2139	1	0	1	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0014	2142	1	1	0	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712