JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TICAM1_chr19_4810932_4836712	0/0	c0015	2139	1	0	0	0	0	1	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0016	2139	1	1	0	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0017	2139	1	1	0	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0018	2139	1	0	0	1	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0019	2142	1	1	0	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0020	2139	1	0	0	1	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	c0021	2139	1	1	0	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM2_chr5_115573496_115607479	1/1	c0001	708	392	87	63	182	14	44	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	c0002	708	5	5	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	c0003	708	3	3	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	c0004	708	1	1	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	c0005	708	1	0	1	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICRR_chr15_89570469_89633023	0/0	c0001	5733	77	3	13	43	5	13	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/1	c0002	5733	77	14	14	32	5	11	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0003	5733	27	0	4	23	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	1/0	c0004	5733	27	1	5	10	3	7	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0005	5733	16	1	1	11	2	1	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0006	5733	15	14	1	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0007	5733	10	7	3	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0008	5733	6	6	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0009	5733	6	0	0	6	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0010	5733	6	1	4	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0011	5733	5	5	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0012	5733	5	0	0	5	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0013	5733	5	5	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0014	5733	4	2	2	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0015	5733	4	1	1	2	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0016	5733	3	3	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0017	5733	3	3	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0018	5733	3	1	2	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0019	5733	3	0	3	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0020	5733	2	2	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0021	5733	2	2	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0022	5733	2	0	2	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0023	5733	2	1	0	0	1	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0024	5733	2	2	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0025	5733	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0026	5733	1	0	1	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0027	5733	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0028	5733	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0029	5733	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0030	5733	1	0	1	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0031	5733	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0032	5733	1	0	0	0	0	1	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0033	5733	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0034	5733	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0035	5733	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0036	5733	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0037	5733	1	0	1	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0038	5733	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023