JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TICRR_chr15_89570469_89633023	0/0	c0039	5733	1	0	1	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0040	5733	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0041	5733	1	0	0	0	0	1	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0042	5733	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0043	5733	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0044	5733	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0045	5733	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0046	5733	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0047	5733	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0048	5733	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0049	5733	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0050	5733	1	0	1	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0051	5733	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0052	5733	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0053	5733	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0054	5733	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0055	5733	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	c0056	5733	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TIE1_chr1_43295982_43328108	0/1	c0001	3417	282	70	39	131	6	35	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0002	3417	86	14	31	32	6	3	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0003	3417	8	3	0	4	0	1	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0004	3417	3	0	0	3	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0005	3417	2	0	0	2	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0006	3417	2	1	1	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0007	3417	2	2	0	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0008	3417	1	1	0	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0009	3417	1	1	0	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0010	3417	1	0	1	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0011	3417	1	0	1	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0012	3417	1	1	0	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0013	3417	1	0	0	1	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0014	3417	1	1	0	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0015	3417	1	0	0	1	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0016	3417	1	1	0	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	1/0	c0017	3417	1	0	0	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0018	3417	1	1	0	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0019	3417	1	0	0	1	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0020	3417	1	0	0	0	0	1	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0021	3417	1	0	0	1	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	c0022	3417	1	0	1	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIFAB_chr5_135439226_135457351	1/1	c0001	486	445	87	86	207	14	49	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	c0002	486	7	7	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	c0003	486	2	0	0	2	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	c0004	486	1	0	0	1	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	c0005	486	1	0	0	0	0	1	copy fasta	TIFAB	chr5	135439226	135457351
TIFA_chr4_112269537_112290904	0/1	c0001	555	317	79	40	168	7	22	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	1/0	c0002	555	95	9	29	41	3	12	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	c0003	555	6	4	1	1	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIGAR_chr12_4316213_4365028	1/1	c0001	813	225	58	41	88	9	27	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	c0002	813	135	24	10	88	1	12	copy fasta	TIGAR	chr12	4316213	4365028