JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TIGAR_chr12_4316213_4365028	0/0	c0003	813	56	10	15	22	6	3	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	c0004	813	1	1	0	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	c0005	813	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	c0006	813	1	1	0	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	c0007	813	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGD1_chr2_232538883_232555557	1/0	c0001	1776	197	60	30	75	11	20	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	c0002	1776	116	3	27	68	5	13	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/1	c0003	1776	68	16	10	27	1	13	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	c0004	1776	36	1	1	32	1	1	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	c0005	1776	9	7	1	0	0	1	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	c0006	1776	3	3	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	c0007	1776	2	0	0	2	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	c0008	1776	2	2	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	c0009	1776	1	0	0	1	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	c0010	1776	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	c0011	1776	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	c0012	1776	1	0	0	1	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	c0013	1776	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	c0014	1776	1	0	1	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	c0015	1776	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD2_chr4_89106533_89119901	1/0	c0001	1578	247	81	47	78	12	28	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/1	c0002	1578	118	11	17	79	4	6	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	c0003	1578	49	2	5	33	1	8	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	c0004	1578	5	0	5	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	c0005	1578	2	1	1	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	c0006	1578	2	0	2	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	c0007	1578	1	0	1	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	c0008	1578	1	0	0	0	1	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	c0009	1578	1	0	0	1	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	c0010	1578	1	0	0	1	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	c0011	1578	1	1	0	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	c0012	1578	1	1	0	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	c0013	1578	1	1	0	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD3_chr11_65349751_65362613	1/1	c0001	1416	347	58	58	174	16	39	copy fasta	TIGD3	chr11	65349751	65362613
TIGD3_chr11_65349751_65362613	0/0	c0002	1416	40	33	3	0	1	3	copy fasta	TIGD3	chr11	65349751	65362613
TIGD3_chr11_65349751_65362613	0/0	c0003	1416	2	0	1	0	1	0	copy fasta	TIGD3	chr11	65349751	65362613
TIGD3_chr11_65349751_65362613	0/0	c0004	1416	2	0	0	2	0	0	copy fasta	TIGD3	chr11	65349751	65362613
TIGD3_chr11_65349751_65362613	0/0	c0005	1416	1	1	0	0	0	0	copy fasta	TIGD3	chr11	65349751	65362613
TIGD4_chr4_152764354_152784730	0/0	c0001	1539	285	59	46	142	7	31	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	1/1	c0002	1539	122	29	18	51	7	15	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	c0003	1539	6	5	1	0	0	0	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	c0004	1539	3	3	0	0	0	0	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	c0005	1539	1	0	0	1	0	0	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	c0006	1539	1	0	0	1	0	0	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	c0007	1539	1	0	0	1	0	0	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	c0008	1539	1	0	1	0	0	0	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	c0009	1539	1	0	0	0	0	1	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	c0010	1539	1	0	0	0	0	1	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	c0011	1539	1	0	0	1	0	0	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	c0012	1539	1	0	0	1	0	0	copy fasta	TIGD4	chr4	152764354	152784730