JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TIGD5_chr8_143592831_143608224	0/1	c0001	1929	231	37	48	99	11	35	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0002	1929	141	55	18	58	2	8	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0003	1929	37	2	4	27	0	4	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0004	1929	10	0	7	0	3	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0005	1929	4	0	0	4	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0006	1929	2	0	0	2	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0007	1929	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0008	1929	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0009	1929	1	0	1	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0010	1929	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0011	1929	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0012	1929	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0013	1929	1	0	1	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0014	1929	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0015	1929	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0016	1929	1	0	0	0	0	1	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0017	1929	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	c0018	1929	1	0	1	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD6_chr5_149988118_150005654	0/1	c0001	1565	182	29	36	83	7	26	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	1/0	c0002	1566	132	21	15	75	4	16	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0003	1566	55	8	17	25	2	3	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0004	1565	20	18	2	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0005	1566	16	0	2	14	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0006	1565	9	6	3	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0007	1564	3	3	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0008	1565	3	3	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0009	1566	3	0	0	3	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0010	1566	2	2	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0011	1565	2	2	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0012	1566	1	0	0	0	1	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0013	1565	1	1	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0014	1565	1	0	0	0	0	1	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0015	1565	1	0	0	1	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0016	1566	1	0	1	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0017	1565	1	0	0	1	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0018	1565	1	0	0	1	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0019	1565	1	0	0	1	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	c0020	1565	1	1	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD7_chr16_3293808_3310430	1/1	c0001	1650	369	80	73	156	16	42	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	c0002	1650	5	5	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	c0003	1650	4	0	1	3	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	c0004	1650	3	3	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	c0005	1650	3	3	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	c0006	1650	2	2	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	c0007	1650	1	1	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	c0008	1650	1	0	0	1	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGIT_chr3_114289028_114315288	1/1	c0001	735	421	96	80	186	16	41	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	c0002	735	1	0	0	0	0	1	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	c0003	735	1	0	0	1	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	c0004	385	1	0	0	1	0	0	copy fasta	TIGIT	chr3	114289028	114315288