JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BBS1_chr11_66505635_66538598	0/0	c0002	1782	62	3	14	34	3	8	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	c0003	1782	38	9	2	27	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	c0004	1782	9	8	1	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	c0005	1782	9	8	1	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	c0006	1782	2	0	0	2	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	c0007	1782	1	0	0	0	0	1	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	c0008	1782	1	0	0	1	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	c0009	1782	1	0	0	1	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	c0010	1782	1	1	0	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	c0011	1782	1	0	0	0	0	1	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	c0012	1782	1	0	1	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	c0013	1782	1	1	0	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS2_chr16_56479385_56525024	0/0	c0001	2166	238	54	42	99	16	27	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/1	c0002	2166	131	18	21	79	0	12	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	c0003	2166	11	11	0	0	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	c0004	2166	7	0	0	4	0	3	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	c0005	2166	3	0	0	3	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	c0006	2166	1	0	0	1	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	c0007	2166	1	1	0	0	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	c0008	2166	1	0	1	0	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	c0009	2166	1	0	0	1	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	c0010	2166	1	0	0	1	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	c0011	2166	1	0	0	1	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	c0012	2166	1	0	0	1	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	1/0	c0013	2166	1	0	0	0	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS4_chr15_72681207_72743473	0/0	c0001	1560	250	57	42	126	8	17	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/1	c0002	1560	115	16	24	49	8	17	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	1/0	c0003	1560	12	10	1	0	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	c0004	1560	8	0	0	8	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	c0005	1560	3	3	0	0	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	c0006	1560	2	0	0	2	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	c0007	1560	2	2	0	0	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	c0008	1560	1	0	0	0	0	1	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	c0009	1560	1	0	0	1	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	c0010	1560	1	0	0	1	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	c0011	1560	1	0	0	0	0	1	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	c0012	1517	1	0	0	1	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	c0013	1560	1	0	1	0	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS5_chr2_169474494_169511655	1/1	c0001	1026	369	70	54	185	14	44	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	c0002	1026	17	17	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	c0003	1026	4	4	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	c0004	1026	3	3	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	c0005	1026	2	0	2	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	c0006	1026	1	1	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	c0007	1026	1	1	0	0	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	c0008	1026	1	0	0	1	0	0	copy fasta	BBS5	chr2	169474494	169511655
BBS7_chr4_121819329_121875474	1/1	c0001	2148	364	83	67	161	14	37	copy fasta	BBS7	chr4	121819329	121875474
BBS7_chr4_121819329_121875474	0/0	c0002	2148	5	5	0	0	0	0	copy fasta	BBS7	chr4	121819329	121875474
BBS7_chr4_121819329_121875474	0/0	c0003	2148	3	0	0	1	0	2	copy fasta	BBS7	chr4	121819329	121875474
BBS7_chr4_121819329_121875474	0/0	c0004	2148	1	0	0	0	0	1	copy fasta	BBS7	chr4	121819329	121875474