JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TIMD4_chr5_156914292_156968226	0/1	c0001	1137	274	70	59	103	16	25	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	c0002	1137	11	1	1	7	0	2	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	c0003	1137	6	3	3	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	c0004	1137	6	6	0	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	1/0	c0005	1137	4	0	3	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	c0006	1137	2	2	0	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	c0007	1137	2	0	0	2	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	c0008	1137	2	2	0	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	c0009	1137	1	0	0	0	0	1	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	c0010	1137	1	1	0	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	c0011	1137	1	1	0	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	c0012	1137	1	1	0	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	c0013	1137	1	1	0	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMELESS_chr12_56411363_56454426	0/1	c0001	3627	140	14	25	81	3	16	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0002	3627	129	26	20	61	8	14	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0003	3627	45	1	14	24	1	5	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0004	3627	18	17	1	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0005	3627	12	0	9	3	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0006	3627	10	7	0	2	1	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	1/0	c0007	3627	8	7	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0008	3627	5	1	3	0	0	1	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0009	3627	4	4	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0010	3627	4	4	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0011	3627	3	0	0	0	1	2	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0012	3627	2	0	0	0	2	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0013	3627	2	0	1	0	0	1	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0014	3627	2	2	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0015	3627	1	1	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0016	3627	1	0	0	1	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0017	3627	1	0	0	0	0	1	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0018	3627	1	0	0	1	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0019	3627	1	1	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0020	3627	1	0	0	1	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0021	3627	1	0	0	1	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0022	3627	1	0	0	1	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0023	3627	1	0	0	1	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0024	3627	1	1	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0025	3627	1	0	0	0	0	1	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0026	3627	1	0	1	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0027	3627	1	0	0	1	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0028	3627	1	0	0	0	0	1	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0029	3627	1	1	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0030	3627	1	1	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0031	3627	1	0	0	1	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	c0032	3627	1	0	0	1	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMM10B_chr11_6476501_6489681	1/1	c0001	312	311	57	63	145	12	32	copy fasta	TIMM10B	chr11	6476501	6489681
TIMM10B_chr11_6476501_6489681	0/0	c0002	312	68	19	20	13	6	10	copy fasta	TIMM10B	chr11	6476501	6489681
TIMM10B_chr11_6476501_6489681	0/0	c0003	312	11	11	0	0	0	0	copy fasta	TIMM10B	chr11	6476501	6489681
TIMM10B_chr11_6476501_6489681	0/0	c0004	312	8	2	1	3	0	2	copy fasta	TIMM10B	chr11	6476501	6489681
TIMM10B_chr11_6476501_6489681	0/0	c0005	312	1	1	0	0	0	0	copy fasta	TIMM10B	chr11	6476501	6489681