JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TIMM10B_chr11_6476501_6489681	0/0	c0006	312	1	0	0	1	0	0	copy fasta	TIMM10B	chr11	6476501	6489681
TIMM10_chr11_57523464_57535754	1/1	c0001	273	370	84	82	152	14	36	copy fasta	TIMM10	chr11	57523464	57535754
TIMM10_chr11_57523464_57535754	0/0	c0002	273	8	8	0	0	0	0	copy fasta	TIMM10	chr11	57523464	57535754
TIMM13_chr19_2420625_2432586	1/1	c0001	288	254	66	65	74	14	33	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	c0002	288	47	13	3	26	0	5	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	c0003	288	1	1	0	0	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM17A_chr1_201950503_201975664	1/1	c0001	516	442	96	79	213	14	38	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17A_chr1_201950503_201975664	0/0	c0002	516	25	2	7	9	4	3	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17A_chr1_201950503_201975664	0/0	c0003	516	1	0	0	0	0	1	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17B_chrX_48888449_48902768	1/0	c0001	519	208	72	34	80	4	17	copy fasta	TIMM17B	chrX	48888449	48902768
TIMM17B_chrX_48888449_48902768	0/1	c0002	519	87	1	24	42	9	10	copy fasta	TIMM17B	chrX	48888449	48902768
TIMM17B_chrX_48888449_48902768	0/0	c0003	518	1	0	0	1	0	0	copy fasta	TIMM17B	chrX	48888449	48902768
TIMM17B_chrX_48888449_48902768	0/0	c0004	519	1	0	0	1	0	0	copy fasta	TIMM17B	chrX	48888449	48902768
TIMM17B_chrX_48888449_48902768	0/0	c0005	519	1	0	0	0	0	1	copy fasta	TIMM17B	chrX	48888449	48902768
TIMM17B_chrX_48888449_48902768	0/0	c0006	520	1	0	0	1	0	0	copy fasta	TIMM17B	chrX	48888449	48902768
TIMM17B_chrX_48888449_48902768	0/0	c0007	520	1	1	0	0	0	0	copy fasta	TIMM17B	chrX	48888449	48902768
TIMM17B_chrX_48888449_48902768	0/0	c0008	520	1	0	0	1	0	0	copy fasta	TIMM17B	chrX	48888449	48902768
TIMM21_chr18_74143523_74165531	1/1	c0001	747	338	64	65	148	16	43	copy fasta	TIMM21	chr18	74143523	74165531
TIMM21_chr18_74143523_74165531	0/0	c0002	747	52	17	5	26	0	4	copy fasta	TIMM21	chr18	74143523	74165531
TIMM21_chr18_74143523_74165531	0/0	c0003	747	9	9	0	0	0	0	copy fasta	TIMM21	chr18	74143523	74165531
TIMM21_chr18_74143523_74165531	0/0	c0004	747	9	0	0	9	0	0	copy fasta	TIMM21	chr18	74143523	74165531
TIMM21_chr18_74143523_74165531	0/0	c0005	747	1	0	0	0	0	1	copy fasta	TIMM21	chr18	74143523	74165531
TIMM21_chr18_74143523_74165531	0/0	c0006	747	1	0	0	1	0	0	copy fasta	TIMM21	chr18	74143523	74165531
TIMM22_chr17_992129_1008671	0/1	c0001	585	434	97	76	196	16	48	copy fasta	TIMM22	chr17	992129	1008671
TIMM22_chr17_992129_1008671	0/0	c0002	585	2	0	2	0	0	0	copy fasta	TIMM22	chr17	992129	1008671
TIMM22_chr17_992129_1008671	0/0	c0003	585	2	2	0	0	0	0	copy fasta	TIMM22	chr17	992129	1008671
TIMM22_chr17_992129_1008671	0/0	c0004	585	1	1	0	0	0	0	copy fasta	TIMM22	chr17	992129	1008671
TIMM23B_chr10_49937053_49979850	0/1	c0001	567	284	88	57	94	12	32	copy fasta	TIMM23B	chr10	49937053	49979850
TIMM23B_chr10_49937053_49979850	1/0	c0002	567	87	5	15	57	4	5	copy fasta	TIMM23B	chr10	49937053	49979850
TIMM23B_chr10_49937053_49979850	0/0	c0003	567	2	2	0	0	0	0	copy fasta	TIMM23B	chr10	49937053	49979850
TIMM23B_chr10_49937053_49979850	0/0	c0004	567	1	1	0	0	0	0	copy fasta	TIMM23B	chr10	49937053	49979850
TIMM23B_chr10_49937053_49979850	0/0	c0005	567	1	0	0	0	0	1	copy fasta	TIMM23B	chr10	49937053	49979850
TIMM23B_chr10_49937053_49979850	0/0	c0006	567	1	0	0	1	0	0	copy fasta	TIMM23B	chr10	49937053	49979850
TIMM23_chr10_45967489_46008742	1/1	c0001	630	374	67	68	182	16	39	copy fasta	TIMM23	chr10	45967489	46008742
TIMM23_chr10_45967489_46008742	0/0	c0002	630	16	14	2	0	0	0	copy fasta	TIMM23	chr10	45967489	46008742
TIMM23_chr10_45967489_46008742	0/0	c0003	630	4	1	0	2	0	1	copy fasta	TIMM23	chr10	45967489	46008742
TIMM23_chr10_45967489_46008742	0/0	c0004	630	2	2	0	0	0	0	copy fasta	TIMM23	chr10	45967489	46008742
TIMM23_chr10_45967489_46008742	0/0	c0005	630	1	1	0	0	0	0	copy fasta	TIMM23	chr10	45967489	46008742
TIMM23_chr10_45967489_46008742	0/0	c0006	630	1	1	0	0	0	0	copy fasta	TIMM23	chr10	45967489	46008742
TIMM23_chr10_45967489_46008742	0/0	c0007	630	1	0	1	0	0	0	copy fasta	TIMM23	chr10	45967489	46008742
TIMM23_chr10_45967489_46008742	0/0	c0008	630	1	0	1	0	0	0	copy fasta	TIMM23	chr10	45967489	46008742
TIMM29_chr19_10923811_10935254	1/1	c0001	783	386	81	68	178	14	43	copy fasta	TIMM29	chr19	10923811	10935254
TIMM29_chr19_10923811_10935254	0/0	c0002	783	21	0	6	14	0	1	copy fasta	TIMM29	chr19	10923811	10935254
TIMM29_chr19_10923811_10935254	0/0	c0003	783	2	0	0	2	0	0	copy fasta	TIMM29	chr19	10923811	10935254
TIMM29_chr19_10923811_10935254	0/0	c0004	783	1	0	0	1	0	0	copy fasta	TIMM29	chr19	10923811	10935254
TIMM29_chr19_10923811_10935254	0/0	c0005	783	1	1	0	0	0	0	copy fasta	TIMM29	chr19	10923811	10935254
TIMM29_chr19_10923811_10935254	0/0	c0006	783	1	0	0	1	0	0	copy fasta	TIMM29	chr19	10923811	10935254
TIMM44_chr19_7921718_7948666	1/1	c0001	1359	318	64	62	133	13	44	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	c0002	1359	22	1	6	13	2	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	c0003	1359	14	13	1	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666