JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TIMM44_chr19_7921718_7948666	0/0	c0004	1359	6	6	0	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	c0005	1359	6	1	5	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	c0006	1359	4	0	3	0	1	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	c0007	1359	3	0	2	1	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	c0008	1359	3	3	0	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	c0009	1359	1	0	1	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	c0010	1359	1	0	1	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	c0011	1359	1	0	1	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	c0012	1359	1	1	0	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	c0013	1359	1	0	0	1	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	c0014	1359	1	0	0	0	0	1	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	c0015	1359	1	0	0	0	0	1	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	c0016	1359	1	1	0	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM50_chr19_39475838_39498779	1/1	c0001	1062	418	81	71	205	15	44	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	c0002	1062	4	4	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	c0003	1062	3	3	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	c0004	1062	2	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	c0005	1062	2	0	0	2	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	c0006	1062	1	0	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	c0007	1062	1	0	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	c0008	1062	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	c0009	1062	1	0	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	c0010	1062	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM8A_chrX_101340661_101353742	1/1	c0001	294	312	76	50	141	13	30	copy fasta	TIMM8A	chrX	101340661	101353742
TIMM8A_chrX_101340661_101353742	0/0	c0002	295	1	0	0	1	0	0	copy fasta	TIMM8A	chrX	101340661	101353742
TIMM8B_chr11_112079800_112091756	1/1	c0001	252	391	95	74	178	10	32	copy fasta	TIMM8B	chr11	112079800	112091756
TIMM8B_chr11_112079800_112091756	0/0	c0002	252	3	3	0	0	0	0	copy fasta	TIMM8B	chr11	112079800	112091756
TIMM8B_chr11_112079800_112091756	0/0	c0003	252	2	0	2	0	0	0	copy fasta	TIMM8B	chr11	112079800	112091756
TIMM9_chr14_58403495_58432531	1/1	c0001	270	377	88	62	180	8	37	copy fasta	TIMM9	chr14	58403495	58432531
TIMM9_chr14_58403495_58432531	0/0	c0002	270	1	0	0	0	0	1	copy fasta	TIMM9	chr14	58403495	58432531
TIMMDC1_chr3_119493547_119530090	0/0	c0001	858	264	20	67	133	13	31	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	c0002	858	84	18	6	53	1	6	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	c0003	858	41	32	4	5	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	c0004	858	30	20	0	1	0	9	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	c0005	858	5	0	3	0	0	2	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	c0006	858	2	0	0	2	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	c0007	858	1	1	0	0	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	c0008	858	1	1	0	0	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMP1_chrX_47577436_47591789	0/0	c0001	624	154	47	19	66	5	17	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	1/1	c0002	624	125	30	22	50	8	13	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	c0003	624	38	1	14	23	0	0	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	c0004	624	3	0	0	3	0	0	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	c0005	624	1	0	0	1	0	0	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	c0006	624	1	0	0	1	0	0	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	c0007	624	1	0	0	1	0	0	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	c0008	624	1	0	1	0	0	0	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	c0009	624	1	0	1	0	0	0	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	c0010	624	1	0	0	1	0	0	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	c0011	625	1	0	0	1	0	0	copy fasta	TIMP1	chrX	47577436	47591789
TIMP2_chr17_78847977_78930387	1/0	c0001	663	259	80	40	95	8	35	copy fasta	TIMP2	chr17	78847977	78930387