JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TIMP2_chr17_78847977_78930387	0/1	c0002	663	54	9	9	28	2	5	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	c0003	663	1	0	0	1	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	c0004	663	1	1	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	c0005	663	1	0	1	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP3_chr22_32796705_32868041	0/0	c0001	636	199	78	41	54	1	25	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	1/0	c0002	636	112	12	18	56	12	13	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	c0003	636	56	2	11	40	1	2	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/1	c0004	636	1	0	0	0	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP4_chr3_12148068_12163912	1/1	c0001	675	409	95	72	191	12	37	copy fasta	TIMP4	chr3	12148068	12163912
TIMP4_chr3_12148068_12163912	0/0	c0002	675	2	2	0	0	0	0	copy fasta	TIMP4	chr3	12148068	12163912
TIMP4_chr3_12148068_12163912	0/0	c0003	675	1	1	0	0	0	0	copy fasta	TIMP4	chr3	12148068	12163912
TIMP4_chr3_12148068_12163912	0/0	c0004	675	1	0	0	0	0	1	copy fasta	TIMP4	chr3	12148068	12163912
TIMP4_chr3_12148068_12163912	0/0	c0005	675	1	0	0	1	0	0	copy fasta	TIMP4	chr3	12148068	12163912
TINAGL1_chr1_31571515_31592686	1/1	c0001	1404	435	93	82	200	12	46	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	c0002	1404	1	1	0	0	0	0	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	c0003	1404	1	0	0	1	0	0	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	c0004	1404	1	1	0	0	0	0	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	c0005	1417	1	0	0	1	0	0	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	c0006	1404	1	1	0	0	0	0	copy fasta	TINAGL1	chr1	31571515	31592686
TINAG_chr6_54303441_54395142	0/1	c0001	1431	176	40	33	86	5	11	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0002	1431	64	8	2	49	0	5	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	1/0	c0003	1431	62	11	17	21	1	11	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0004	1431	16	0	4	8	2	2	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0005	1431	13	5	2	1	1	4	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0006	1431	6	1	2	0	2	1	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0007	1431	6	6	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0008	1431	3	1	2	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0009	1431	2	2	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0010	1431	2	2	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0011	1431	2	0	0	0	1	1	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0012	1431	2	1	0	1	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0013	1431	2	1	1	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0014	1431	2	2	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0015	1431	2	2	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0016	1431	2	1	1	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0017	1431	2	2	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0018	1431	2	2	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0019	1431	1	0	0	1	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0020	1431	1	1	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0021	1431	1	1	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0022	1431	1	0	0	1	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0023	1431	1	0	0	0	0	1	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0024	1431	1	0	0	1	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0025	1431	1	0	0	1	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	c0026	1431	1	1	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINCR_chr19_5553167_5572953	1/1	c0001	264	395	95	82	157	16	43	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	c0002	264	1	0	0	0	0	1	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	c0003	264	1	1	0	0	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	c0004	264	1	0	0	1	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINF2_chr14_24234643_24247623	1/1	c0001	1356	395	75	63	199	14	42	copy fasta	TINF2	chr14	24234643	24247623