JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TINF2_chr14_24234643_24247623	0/0	c0002	1356	9	9	0	0	0	0	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	c0003	1356	8	8	0	0	0	0	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	c0004	1356	5	0	5	0	0	0	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	c0005	1356	2	2	0	0	0	0	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	c0006	1356	2	0	0	0	0	2	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	c0007	1356	1	0	0	0	0	1	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	c0008	1346	1	0	0	1	0	0	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	c0009	1356	1	0	0	0	0	1	copy fasta	TINF2	chr14	24234643	24247623
TIPARP_chr3_156669590_156711770	1/1	c0001	1974	332	68	63	142	16	41	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	c0002	1974	13	13	0	0	0	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	c0003	1974	2	2	0	0	0	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	c0004	1974	1	1	0	0	0	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	c0005	1974	1	0	0	1	0	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	c0006	1974	1	0	1	0	0	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	c0007	1974	1	0	0	1	0	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	c0008	1974	1	0	0	0	0	1	copy fasta	TIPARP	chr3	156669590	156711770
TIPIN_chr15_66331191_66361685	0/1	c0001	906	284	74	53	113	11	32	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	c0002	906	70	7	7	49	3	4	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	c0003	906	36	1	11	19	0	5	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	c0004	906	8	1	2	0	3	2	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	1/0	c0005	906	8	5	2	0	0	0	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	c0006	906	3	3	0	0	0	0	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	c0007	906	3	3	0	0	0	0	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	c0008	906	2	0	0	0	1	1	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	c0009	906	1	0	1	0	0	0	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	c0010	906	1	0	0	1	0	0	copy fasta	TIPIN	chr15	66331191	66361685
TIPRL_chr1_168173962_168207109	1/1	c0001	819	384	84	62	180	14	42	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	c0002	819	2	2	0	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIRAP_chr11_126278093_126299933	1/0	c0001	666	249	62	45	101	9	31	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	c0002	666	44	6	7	27	0	4	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	c0003	666	39	9	12	11	2	5	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/1	c0004	666	14	0	5	2	3	3	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	c0005	666	4	4	0	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	c0006	666	4	4	0	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	c0007	666	2	0	0	2	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	c0008	666	2	0	2	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	c0009	666	1	0	1	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	c0010	666	1	0	0	1	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	c0011	666	1	0	0	0	0	1	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	c0012	666	1	0	0	1	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	c0013	666	1	1	0	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	c0014	666	1	0	0	1	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TJAP1_chr6_43472570_43511554	1/1	c0001	1674	240	63	56	68	14	37	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	c0002	1674	12	2	3	6	0	1	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	c0003	1674	10	9	0	0	0	1	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	c0004	1674	8	8	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	c0005	1674	6	6	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	c0006	1674	2	2	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	c0007	1674	2	2	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	c0008	1674	2	0	0	2	0	0	copy fasta	TJAP1	chr6	43472570	43511554