JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TJAP1_chr6_43472570_43511554	0/0	c0009	1674	1	0	0	0	0	1	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	c0010	1674	1	0	0	1	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	c0011	1674	1	0	0	1	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	c0012	1674	1	0	1	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	c0013	1674	1	1	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	c0014	1674	1	1	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJP1_chr15_29695152_29827468	0/1	c0001	5307	111	30	25	38	3	14	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0002	5307	65	25	11	25	2	2	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0003	5307	40	0	12	15	1	12	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0004	5307	15	0	2	4	4	5	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0005	5307	4	4	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0006	5307	3	3	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0007	5307	2	0	0	2	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0008	5307	2	0	0	2	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0009	5307	2	2	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0010	5307	1	0	0	0	0	1	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0011	5307	1	0	1	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0012	5307	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0013	5307	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0014	5307	1	0	0	1	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0015	5307	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0016	5307	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0017	5307	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0018	5307	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0019	5307	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0020	5307	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0021	5307	1	0	0	1	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0022	5307	1	0	0	1	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0023	5307	1	0	0	1	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0024	5307	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0025	5307	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	c0026	5307	1	0	1	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP2_chr9_69169277_69260208	0/1	c0001	3573	126	16	21	64	7	17	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0002	3573	67	3	16	40	1	7	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0003	3573	25	1	4	17	2	1	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0004	3573	21	4	2	13	0	2	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	1/0	c0005	3573	21	7	5	0	4	4	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0006	3573	9	8	0	0	0	1	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0007	3573	7	4	2	0	0	1	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0008	3573	7	7	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0009	3573	6	0	2	1	2	1	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0010	3573	6	1	3	0	0	2	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0011	3573	5	5	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0012	3573	4	1	0	1	0	2	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0013	3573	4	4	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0014	3573	3	3	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0015	3573	3	2	1	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0016	3573	3	1	1	0	0	1	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0017	3573	3	3	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0018	3573	2	2	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208