JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TJP2_chr9_69169277_69260208	0/0	c0019	3573	2	2	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0020	3573	2	2	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0021	3573	2	2	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0022	3573	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0023	3573	1	0	0	0	0	1	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0024	3573	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0025	3573	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0026	3573	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0027	3573	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0028	3573	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0029	3573	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0030	3573	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0031	3573	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0032	3573	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0033	3573	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0034	3573	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0035	3573	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0036	3573	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0037	3573	1	0	0	0	0	1	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0038	3573	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0039	3573	1	0	1	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0040	3573	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0041	3573	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0042	3573	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0043	3573	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0044	3573	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0045	3573	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0046	3573	1	0	0	0	0	1	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0047	3573	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0048	3573	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	c0049	3573	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP3_chr19_3703384_3755813	1/0	c0001	2760	68	10	11	38	3	5	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0002	2760	46	4	18	15	5	4	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0003	2760	43	0	6	33	0	4	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/1	c0004	2760	37	1	12	7	5	11	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0005	2760	25	1	3	15	3	3	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0006	2760	22	2	8	6	0	6	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0007	2760	16	0	1	11	0	4	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0008	2760	11	11	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0009	2760	10	0	0	7	0	3	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0010	2760	9	9	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0011	2760	8	0	2	3	1	2	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0012	2760	8	3	5	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0013	2760	6	0	0	6	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0014	2760	6	6	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0015	2760	5	2	0	3	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0016	2760	5	5	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0017	2760	5	0	0	5	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0018	2760	4	4	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0019	2760	3	3	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813