JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TJP3_chr19_3703384_3755813	0/0	c0020	2760	3	2	1	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0021	2760	3	3	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0022	2760	3	0	0	3	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0023	2760	2	0	2	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0024	2760	2	0	1	0	0	1	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0025	2760	2	0	0	2	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0026	2760	2	0	0	2	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0027	2760	2	2	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0028	2760	2	2	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0029	2760	2	2	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0030	2760	2	1	0	1	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0031	2760	2	2	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0032	2760	2	0	1	1	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0033	2760	1	0	0	0	0	1	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0034	2760	1	0	0	0	0	1	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0035	2760	1	0	0	1	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0036	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0037	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0038	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0039	2760	1	0	0	1	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0040	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0041	2760	1	0	0	1	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0042	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0043	2760	1	0	0	0	0	1	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0044	2760	1	0	1	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0045	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0046	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0047	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0048	2760	1	0	1	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0049	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0050	2760	1	0	1	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0051	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0052	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0053	2760	1	0	0	0	1	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0054	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0055	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0056	2760	1	0	0	1	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0057	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0058	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0059	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0060	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0061	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0062	2760	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0063	2760	1	0	0	1	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	c0064	2760	1	0	0	1	0	0	copy fasta	TJP3	chr19	3703384	3755813
TK1_chr17_78169091_78192052	0/0	c0001	705	215	61	50	73	8	23	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	1/1	c0002	705	125	14	28	60	8	13	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	c0003	705	54	2	1	50	0	1	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	c0004	705	32	7	4	11	0	10	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	c0005	705	7	7	0	0	0	0	copy fasta	TK1	chr17	78169091	78192052