JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TK1_chr17_78169091_78192052	0/0	c0006	705	5	0	0	0	2	3	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	c0007	705	2	0	0	2	0	0	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	c0008	705	2	2	0	0	0	0	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	c0009	705	1	0	0	1	0	0	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	c0010	705	1	1	0	0	0	0	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	c0011	705	1	0	0	1	0	0	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	c0012	705	1	0	1	0	0	0	copy fasta	TK1	chr17	78169091	78192052
TK2_chr16_66503003_66555122	1/1	c0001	798	297	83	54	122	6	30	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	c0002	798	1	0	0	1	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	c0003	798	1	0	0	1	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	c0004	798	1	1	0	0	0	0	copy fasta	TK2	chr16	66503003	66555122
TKFC_chr11_61328228_61354242	0/1	c0001	1728	135	21	31	54	7	21	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	1/0	c0002	1728	74	54	4	9	0	6	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0003	1728	7	0	4	0	2	1	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0004	1728	7	7	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0005	1728	3	3	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0006	1728	2	2	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0007	1728	2	2	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0008	1728	1	0	0	0	0	1	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0009	1728	1	0	0	0	1	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0010	1728	1	0	0	1	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0011	1728	1	0	0	1	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0012	1728	1	0	1	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0013	1728	1	0	0	1	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0014	1728	1	1	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0015	1728	1	1	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0016	1728	1	0	0	0	0	1	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0017	1728	1	1	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0018	1728	1	0	0	1	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	c0019	1728	1	0	0	1	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKTL1_chrX_154290795_154335350	1/1	c0001	1791	259	71	52	104	7	23	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	c0002	1791	5	5	0	0	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	c0003	1790	1	0	0	1	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	c0004	1791	1	0	0	1	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	c0005	1791	1	0	1	0	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	c0006	1791	1	0	0	1	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	c0007	1791	1	0	1	0	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	c0008	1790	1	0	0	1	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	c0009	1791	1	0	0	0	0	1	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	c0010	1792	1	0	0	1	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL2_chr4_163466095_163478754	1/1	c0001	1881	288	56	58	137	9	26	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0002	1881	83	13	9	54	4	3	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0003	1881	21	0	2	12	1	6	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0004	1881	6	6	0	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0005	1881	6	6	0	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0006	1881	5	5	0	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0007	1881	5	5	0	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0008	1881	3	0	0	3	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0009	1881	2	0	0	2	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0010	1881	2	0	0	0	0	2	copy fasta	TKTL2	chr4	163466095	163478754