JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TKTL2_chr4_163466095_163478754	0/0	c0011	1881	2	0	0	0	0	2	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0012	1881	1	0	0	1	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0013	1881	1	1	0	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0014	1881	1	1	0	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0015	1881	1	1	0	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0016	1881	1	0	0	1	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0017	1881	1	1	0	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0018	1881	1	1	0	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0019	1881	1	0	0	0	0	1	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0020	1881	1	0	0	0	0	1	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0021	1881	1	0	1	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0022	1881	1	0	0	0	0	1	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0023	1881	1	0	0	1	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	c0024	1881	1	0	0	1	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKT_chr3_53219712_53261022	1/0	c0001	1872	281	71	52	118	13	26	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/1	c0002	1872	57	4	15	25	3	9	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	c0003	1872	13	0	0	5	0	8	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	c0004	1872	4	0	4	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	c0005	1872	4	3	1	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	c0006	1872	3	0	0	3	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	c0007	1872	2	0	0	2	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	c0008	1872	2	2	0	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	c0009	1872	2	2	0	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	c0010	1872	2	2	0	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	c0011	1872	1	0	1	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	c0012	1872	1	1	0	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	c0013	1872	1	1	0	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	c0014	1872	1	0	0	1	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	c0015	1872	1	0	0	1	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	c0016	1872	1	0	0	0	0	1	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	c0017	1872	1	0	1	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	c0018	1872	1	0	0	1	0	0	copy fasta	TKT	chr3	53219712	53261022
TLCD1_chr17_28719348_28731233	1/1	c0001	744	290	64	61	111	11	41	copy fasta	TLCD1	chr17	28719348	28731233
TLCD1_chr17_28719348_28731233	0/0	c0002	744	51	12	7	27	1	4	copy fasta	TLCD1	chr17	28719348	28731233
TLCD1_chr17_28719348_28731233	0/0	c0003	744	9	7	2	0	0	0	copy fasta	TLCD1	chr17	28719348	28731233
TLCD1_chr17_28719348_28731233	0/0	c0004	744	2	2	0	0	0	0	copy fasta	TLCD1	chr17	28719348	28731233
TLCD1_chr17_28719348_28731233	0/0	c0005	744	1	0	0	1	0	0	copy fasta	TLCD1	chr17	28719348	28731233
TLCD1_chr17_28719348_28731233	0/0	c0006	744	1	0	0	0	0	1	copy fasta	TLCD1	chr17	28719348	28731233
TLCD1_chr17_28719348_28731233	0/0	c0007	744	1	0	0	1	0	0	copy fasta	TLCD1	chr17	28719348	28731233
TLCD1_chr17_28719348_28731233	0/0	c0008	744	1	1	0	0	0	0	copy fasta	TLCD1	chr17	28719348	28731233
TLCD2_chr17_1697816_1715377	0/1	c0001	795	303	61	70	120	16	35	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	c0002	795	125	14	7	92	2	10	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	c0003	795	7	7	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	c0004	795	4	4	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	c0005	795	4	4	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	c0006	795	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	c0007	795	1	0	0	0	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	c0008	795	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	c0009	795	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	c0010	795	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377