JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BBS7_chr4_121819329_121875474	0/0	c0005	2148	1	0	1	0	0	0	copy fasta	BBS7	chr4	121819329	121875474
BBS9_chr7_33124564_33611069	1/1	c0001	2664	179	46	30	68	9	24	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0002	2664	45	14	6	15	1	9	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0003	2664	6	0	0	6	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0004	2664	5	5	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0005	2664	4	3	1	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0006	2664	3	0	0	3	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0007	2664	2	0	1	1	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0008	2664	2	2	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0009	2664	2	2	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0010	2664	2	1	0	0	0	1	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0011	2664	2	2	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0012	2664	2	2	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0013	2664	1	1	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0014	2664	1	0	1	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0015	2664	1	0	0	0	0	1	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0016	2664	1	0	0	0	0	1	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0017	2664	1	1	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0018	2664	1	1	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0019	2664	1	0	1	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0020	2664	1	0	0	1	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0021	2664	1	1	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0022	2664	1	1	0	0	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0023	2664	1	0	0	0	0	1	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0024	2664	1	0	0	1	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0025	2664	1	0	0	0	0	1	copy fasta	BBS9	chr7	33124564	33611069
BBS9_chr7_33124564_33611069	0/0	c0026	2664	1	0	0	1	0	0	copy fasta	BBS9	chr7	33124564	33611069
BBX_chr3_107517962_107816339	1/1	c0001	2826	196	61	51	46	8	28	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	c0002	2823	9	1	5	0	2	1	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	c0003	2826	6	6	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	c0004	2826	2	2	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	c0005	2826	2	2	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	c0006	2826	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	c0007	2826	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	c0008	2826	1	0	1	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	c0009	2826	1	0	1	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	c0010	2826	1	0	0	0	0	1	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	c0011	2826	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BBX_chr3_107517962_107816339	0/0	c0012	2826	1	1	0	0	0	0	copy fasta	BBX	chr3	107517962	107816339
BCAM_chr19_44804103_44826421	1/1	c0001	1887	243	39	50	124	8	20	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0002	1887	79	29	19	13	7	11	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0003	1887	27	3	0	20	0	4	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0004	1887	15	1	4	3	1	6	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0005	1887	5	5	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0006	1887	4	4	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0007	1887	3	0	0	3	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0008	1887	3	3	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0009	1887	3	0	0	3	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0010	1887	2	2	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0011	1887	2	2	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421