JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TLCD2_chr17_1697816_1715377	0/0	c0011	795	1	0	0	0	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	c0012	795	1	0	1	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	c0013	795	1	0	0	0	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD3A_chr17_727596_747968	1/1	c0001	774	380	54	74	184	18	48	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	c0002	774	6	6	0	0	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	c0003	774	3	3	0	0	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	c0004	774	2	2	0	0	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	c0005	774	1	0	0	1	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	c0006	774	1	0	0	1	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	c0007	774	1	0	0	1	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	c0008	774	1	1	0	0	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	c0009	774	1	0	0	1	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3B_chr16_30019427_30036271	1/0	c0001	825	201	46	51	82	5	16	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD3B_chr16_30019427_30036271	0/1	c0002	825	144	30	21	67	7	18	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD3B_chr16_30019427_30036271	0/0	c0003	825	3	3	0	0	0	0	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD3B_chr16_30019427_30036271	0/0	c0004	825	1	0	0	1	0	0	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD3B_chr16_30019427_30036271	0/0	c0005	825	1	1	0	0	0	0	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD4_chr1_95112355_95202607	1/1	c0001	792	375	89	76	168	8	32	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	c0002	792	1	1	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	c0003	792	1	0	0	1	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	c0004	792	1	0	0	1	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD5_chr11_120320299_120338686	1/1	c0001	738	430	95	83	186	18	46	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	c0002	738	1	0	1	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	c0003	738	1	1	0	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLDC2_chr20_36871138_36899235	1/1	c0001	648	282	47	48	141	11	33	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	c0002	648	73	43	18	1	5	6	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	c0003	648	12	0	6	6	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	c0004	648	3	0	0	0	0	3	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	c0005	648	3	0	0	3	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	c0006	648	3	0	0	3	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	c0007	648	2	0	0	2	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	c0008	648	1	1	0	0	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	c0009	648	1	0	0	0	0	1	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	c0010	648	1	0	0	0	0	1	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	c0011	648	1	1	0	0	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	c0012	648	1	1	0	0	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	c0013	648	1	1	0	0	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLE1_chr9_81578683_81694547	0/1	c0001	2313	253	64	39	118	7	24	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	c0002	2313	38	17	12	0	4	5	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	1/0	c0003	2313	27	2	3	18	2	1	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	c0004	2313	13	0	2	4	2	5	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	c0005	2313	7	3	0	4	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	c0006	2313	4	4	0	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	c0007	2313	2	2	0	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	c0008	2313	2	0	1	1	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	c0009	2313	2	0	0	0	0	2	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	c0010	2313	1	0	0	0	0	1	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	c0011	2313	1	0	1	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	c0012	2313	1	0	0	0	1	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	c0013	2313	1	1	0	0	0	0	copy fasta	TLE1	chr9	81578683	81694547