JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TLE1_chr9_81578683_81694547	0/0	c0014	2313	1	0	1	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	c0015	2313	1	0	1	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	c0016	2313	1	1	0	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	c0017	2313	1	0	0	1	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE2_chr19_2992644_3034280	1/0	c0001	2232	266	60	52	107	16	30	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/1	c0002	2232	90	9	23	50	0	7	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0003	2232	9	4	3	0	1	1	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0004	2232	8	0	1	7	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0005	2232	5	5	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0006	2232	3	3	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0007	2232	2	0	1	1	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0008	2232	2	2	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0009	2232	2	0	0	0	0	2	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0010	2232	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0011	2232	1	0	1	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0012	2232	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0013	2232	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0014	2232	1	0	0	0	1	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0015	2232	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0016	2232	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0017	2232	1	0	0	0	0	1	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0018	2232	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0019	2232	1	0	0	1	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0020	2232	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0021	2232	1	0	1	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0022	2232	1	0	0	1	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0023	2232	1	0	0	0	0	1	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0024	2232	1	0	0	1	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0025	2232	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	c0026	2232	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE3_chr15_70042790_70102917	1/0	c0001	2310	113	36	11	46	5	14	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/1	c0002	2310	105	16	31	30	6	21	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	c0003	2310	88	11	14	53	6	4	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	c0004	2310	37	0	3	29	1	4	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	c0005	2310	20	15	4	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	c0006	2310	8	8	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	c0007	2310	2	1	1	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	c0008	2310	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	c0009	2310	1	0	0	0	0	1	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	c0010	2310	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	c0011	2310	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	c0012	2310	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	c0013	2310	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	c0014	2310	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	c0015	2310	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	c0016	2310	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	c0017	2310	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	c0018	2310	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE4_chr9_79566965_79731882	0/1	c0001	2322	244	74	46	93	9	21	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	1/0	c0002	2322	2	0	0	0	0	1	copy fasta	TLE4	chr9	79566965	79731882