JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TLE4_chr9_79566965_79731882	0/0	c0003	2322	2	0	1	0	1	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	c0004	2322	2	2	0	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	c0005	2322	2	0	2	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	c0006	2322	1	1	0	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	c0007	2322	1	1	0	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	c0008	2322	1	0	1	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	c0009	2322	1	1	0	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	c0010	2322	1	1	0	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	c0011	2322	1	0	0	1	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE5_chr19_3047910_3067495	1/1	c0001	594	410	96	78	168	18	48	copy fasta	TLE5	chr19	3047910	3067495
TLE6_chr19_2972564_3000179	1/0	c0001	1719	189	15	33	99	12	29	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/1	c0002	1719	94	4	20	62	0	7	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	c0003	1719	56	24	16	8	3	5	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	c0004	1719	31	21	6	0	1	3	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	c0005	1719	9	9	0	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	c0006	1719	6	6	0	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	c0007	1719	4	4	0	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	c0008	1719	3	3	0	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	c0009	1719	3	3	0	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	c0010	1719	3	2	1	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	c0011	1719	3	0	3	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	c0012	1719	2	2	0	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	c0013	1719	2	2	0	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	c0014	1719	1	1	0	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	c0015	1719	1	0	1	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	c0016	1719	1	1	0	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	c0017	1719	1	1	0	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	c0018	1719	1	0	0	1	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE7_chr16_71424980_71447054	0/1	c0001	1326	219	72	46	66	11	23	copy fasta	TLE7	chr16	71424980	71447054
TLE7_chr16_71424980_71447054	1/0	c0002	1326	170	2	33	113	5	16	copy fasta	TLE7	chr16	71424980	71447054
TLE7_chr16_71424980_71447054	0/0	c0003	1326	19	18	1	0	0	0	copy fasta	TLE7	chr16	71424980	71447054
TLE7_chr16_71424980_71447054	0/0	c0004	1326	1	0	0	1	0	0	copy fasta	TLE7	chr16	71424980	71447054
TLE7_chr16_71424980_71447054	0/0	c0005	1326	1	0	0	0	0	1	copy fasta	TLE7	chr16	71424980	71447054
TLE7_chr16_71424980_71447054	0/0	c0006	1326	1	1	0	0	0	0	copy fasta	TLE7	chr16	71424980	71447054
TLE7_chr16_71424980_71447054	0/0	c0007	1326	1	1	0	0	0	0	copy fasta	TLE7	chr16	71424980	71447054
TLK1_chr2_170985823_171165893	1/1	c0001	2301	179	92	27	43	5	10	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	c0002	2301	53	0	9	38	0	6	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	c0003	2301	33	1	14	15	3	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	c0004	2301	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK2_chr17_62473825_62620481	1/0	c0001	2253	151	66	32	36	6	10	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/1	c0002	2253	138	12	34	64	6	21	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	c0003	2253	1	0	0	0	0	1	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	c0004	2253	1	1	0	0	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	c0005	2253	1	1	0	0	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLL1_chr4_165868237_166109457	0/1	c0001	3042	124	27	28	45	5	18	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0002	3042	48	4	1	37	3	3	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0003	3042	13	2	1	9	0	1	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0004	3042	12	12	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0005	3042	10	4	5	0	0	1	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0006	3042	4	4	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457