JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TLL1_chr4_165868237_166109457	1/0	c0007	3042	4	3	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0008	3042	3	3	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0009	3042	3	3	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0010	3042	3	2	0	0	0	1	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0011	3042	2	2	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0012	3042	2	2	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0013	3042	2	2	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0014	3042	2	2	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0015	3042	2	2	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0016	3042	2	2	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0017	3042	1	1	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0018	3042	1	1	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0019	3042	1	0	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0020	3042	1	0	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0021	3042	1	0	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0022	3042	1	1	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0023	3042	1	0	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0024	3042	1	0	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0025	3042	1	0	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0026	3042	1	1	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0027	3042	1	1	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0028	3042	1	1	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0029	3042	1	1	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	c0030	3042	1	1	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL2_chr10_96359608_96518926	1/1	c0001	3048	171	33	40	68	6	22	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0002	3048	35	7	8	7	1	12	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0003	3048	12	12	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0004	3048	8	8	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0005	3048	4	0	0	4	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0006	3048	3	3	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0007	3048	3	2	1	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0008	3048	3	3	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0009	3048	2	0	0	2	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0010	3048	2	0	2	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0011	3048	1	0	0	0	0	1	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0012	3048	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0013	3048	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0014	3048	1	0	0	0	1	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0015	3048	1	0	0	0	0	1	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0016	3048	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0017	3048	1	0	0	1	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0018	3048	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0019	3048	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0020	3048	1	0	1	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0021	3048	1	0	0	0	0	1	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0022	3048	1	0	0	0	0	1	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	c0023	3048	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLN1_chr9_35691948_35737195	1/0	c0001	7626	188	71	38	53	2	23	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0002	7626	72	1	21	40	4	6	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0003	7626	60	0	4	50	2	4	copy fasta	TLN1	chr9	35691948	35737195