JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TLN1_chr9_35691948_35737195	0/0	c0004	7626	18	0	2	14	0	2	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0005	7626	8	8	0	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0006	7626	4	1	1	0	2	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0007	7626	3	0	3	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0008	7626	2	2	0	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0009	7626	2	2	0	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0010	7626	2	2	0	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/1	c0011	7626	1	0	0	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0012	7626	1	0	0	0	0	1	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0013	7626	1	0	0	0	0	1	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0014	7626	1	1	0	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0015	7626	1	0	0	1	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0016	7626	1	1	0	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0017	7626	1	1	0	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0018	7626	1	0	0	0	1	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0019	7626	1	0	0	0	1	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0020	7626	1	0	1	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0021	7626	1	0	0	0	0	1	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0022	7626	1	0	0	1	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	c0023	7626	1	0	0	1	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN2_chr15_62385550_62849631	0/1	c0001	7629	17	2	6	2	2	4	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0002	7629	9	9	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0003	7629	9	0	4	3	0	2	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0004	7629	6	1	2	1	1	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0005	7629	6	0	2	2	1	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0006	7629	6	1	1	2	0	2	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0007	7629	6	2	2	1	0	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0008	7629	4	4	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0009	7629	4	3	0	0	0	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	1/0	c0010	7629	3	2	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0011	7629	3	0	0	2	0	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0012	7629	3	1	0	0	2	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0013	7629	2	2	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0014	7629	2	2	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0015	7629	2	2	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0016	7629	2	2	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0017	7629	2	1	0	0	0	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0018	7629	2	2	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0019	7629	2	1	0	1	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0020	7629	2	0	1	1	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0021	7629	2	0	1	0	0	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0022	7629	2	1	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0023	7629	2	2	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0024	7629	2	1	0	1	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0025	7629	2	1	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0026	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0027	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0028	7629	1	0	0	0	0	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0029	7629	1	0	0	0	1	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0030	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631