JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TLN2_chr15_62385550_62849631	0/0	c0031	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0032	7629	1	0	0	1	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0033	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0034	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0035	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0036	7629	1	0	0	0	0	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0037	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0038	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0039	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0040	7629	1	0	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0041	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0042	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0043	7629	1	0	0	0	0	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0044	7629	1	0	0	1	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0045	7629	1	0	0	0	1	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0046	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0047	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0048	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0049	7629	1	0	0	0	0	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0050	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0051	7629	1	0	0	0	0	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0052	7629	1	0	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0053	7629	1	0	0	1	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0054	7629	1	0	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0055	7629	1	0	0	1	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0056	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0057	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0058	7629	1	0	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0059	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0060	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0061	7629	1	0	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0062	7629	1	0	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0063	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0064	7629	1	0	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0065	7629	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0066	7629	1	0	0	1	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	c0067	7629	1	0	0	1	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLNRD1_chr15_80995923_81010788	1/1	c0001	1089	323	80	59	133	11	38	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	c0002	1089	11	0	8	0	1	2	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	c0003	1089	6	0	0	6	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	c0004	1089	6	5	1	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	c0005	1089	5	5	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	c0006	1089	4	4	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	c0007	1089	2	2	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	c0008	1089	1	0	0	1	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLR10_chr4_38767238_38787990	1/0	c0001	2436	131	30	43	35	7	15	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0002	2436	80	0	9	66	1	4	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0003	2436	49	17	1	18	2	11	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0004	2436	46	4	13	22	0	7	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0005	2436	39	1	1	34	1	2	copy fasta	TLR10	chr4	38767238	38787990