JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TLR10_chr4_38767238_38787990	0/0	c0006	2436	17	17	0	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0007	2436	15	6	1	4	1	3	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0008	2436	12	10	2	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0009	2436	9	0	0	9	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0010	2436	9	0	0	9	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0011	2436	6	0	4	2	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0012	2436	5	0	4	0	0	1	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0013	2436	3	0	0	0	0	3	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0014	2436	3	0	0	3	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0015	2436	2	1	1	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0016	2436	2	2	0	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0017	2436	2	2	0	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/1	c0018	2436	1	0	0	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0019	2436	1	1	0	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0020	2436	1	1	0	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0021	2436	1	0	0	0	0	1	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0022	2436	1	0	0	1	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0023	2436	1	0	0	0	0	1	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0024	2436	1	0	1	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	c0025	2436	1	0	0	1	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR1_chr4_38791255_38809791	0/1	c0001	2361	174	26	26	94	1	26	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0002	2361	103	12	16	60	2	13	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	1/0	c0003	2361	48	5	29	1	8	4	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0004	2361	22	0	0	22	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0005	2361	17	0	0	17	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0006	2361	13	9	1	1	0	2	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0007	2361	11	11	0	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0008	2361	10	10	0	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0009	2361	9	9	0	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0010	2361	8	0	0	8	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0011	2361	5	0	0	5	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0012	2361	3	3	0	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0013	2361	3	3	0	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0014	2361	2	0	0	0	2	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0015	2361	2	0	1	0	1	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0016	2361	1	0	0	0	0	1	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0017	2361	1	0	1	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0018	2361	1	0	0	1	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0019	2361	1	0	0	1	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0020	2361	1	0	0	1	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0021	2361	1	0	1	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0022	2361	1	0	1	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0023	2361	1	1	0	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0024	2361	1	1	0	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0025	2361	1	0	1	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0026	2361	1	1	0	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0027	2361	1	0	0	0	0	1	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0028	2361	1	1	0	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0029	2361	1	0	1	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	c0030	2361	1	0	0	0	0	1	copy fasta	TLR1	chr4	38791255	38809791