JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TLR1_chr4_38791255_38809791	0/0	c0031	765	1	0	0	1	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR2_chr4_153679280_153711260	1/0	c0001	2355	212	28	27	127	9	20	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0002	2355	98	62	13	8	7	8	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/1	c0003	2355	74	1	8	56	0	8	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0004	2355	13	0	1	12	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0005	2355	11	0	11	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0006	2355	4	0	4	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0007	2355	3	0	2	0	0	1	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0008	2355	2	0	2	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0009	2355	1	0	1	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0010	2355	1	1	0	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0011	2355	1	1	0	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0012	2355	1	0	0	0	0	1	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0013	2355	1	1	0	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0014	2355	1	0	1	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0015	2355	1	0	0	1	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0016	2355	1	0	1	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0017	2355	1	0	0	1	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0018	2355	1	0	1	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0019	2355	1	1	0	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0020	2355	1	0	0	1	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0021	2355	1	1	0	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0022	2355	1	1	0	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	c0023	2355	1	1	0	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR3_chr4_186064156_186093073	1/1	c0001	2715	158	34	33	69	5	15	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0002	2715	132	11	16	75	4	26	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0003	2715	93	5	18	59	7	4	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0004	2715	17	16	1	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0005	2715	11	6	5	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0006	2715	10	9	1	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0007	2715	6	6	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0008	2715	3	0	0	3	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0009	2715	3	3	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0010	2715	2	0	0	2	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0011	2715	2	2	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0012	2715	2	2	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0013	2715	1	1	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0014	2715	1	1	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0015	2715	1	0	0	1	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0016	2715	1	0	0	0	0	1	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0017	2715	1	0	0	1	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0018	2715	1	0	0	0	1	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0019	2715	1	0	0	1	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0020	2715	1	0	0	0	1	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0021	2715	1	0	0	1	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0022	2715	1	1	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	c0023	2715	1	1	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR4_chr9_117699403_117729735	1/1	c0001	2520	338	72	67	151	14	32	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0002	2520	13	11	2	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0003	2520	10	1	4	0	1	4	copy fasta	TLR4	chr9	117699403	117729735