JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TLR4_chr9_117699403_117729735	0/0	c0004	2520	6	3	0	0	0	3	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0005	2520	4	4	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0006	2520	3	0	2	0	0	1	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0007	2520	3	2	1	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0008	2520	2	0	0	2	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0009	2520	2	2	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0010	2520	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0011	2520	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0012	2520	1	0	0	1	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0013	2520	1	0	0	0	1	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0014	2520	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0015	2520	1	0	0	0	0	1	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0016	2520	1	0	0	0	0	1	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0017	2520	1	0	1	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0018	2520	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0019	2520	1	0	1	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0020	2520	1	0	0	1	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0021	2520	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	c0022	2520	1	0	0	1	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR5_chr1_223104404_223148248	1/1	c0001	2577	163	54	32	59	3	13	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0002	2577	76	3	18	34	3	18	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0003	2577	58	0	10	40	4	4	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0004	2577	12	11	0	0	1	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0005	2577	11	4	1	3	1	2	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0006	2577	11	0	7	0	4	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0007	2577	8	8	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0008	2577	4	0	0	4	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0009	2577	3	0	0	3	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0010	2577	3	0	2	0	0	1	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0011	2577	2	0	0	2	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0012	2577	2	2	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0013	2577	2	0	0	0	0	2	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0014	2577	2	0	0	2	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0015	2577	1	0	0	1	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0016	2577	1	0	0	0	0	1	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0017	2577	1	1	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0018	2577	1	0	0	1	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0019	2577	1	0	0	1	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0020	2577	1	0	1	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0021	2577	1	1	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0022	2577	1	0	1	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0023	2577	1	1	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0024	2577	1	1	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	c0025	2577	1	0	0	0	0	1	copy fasta	TLR5	chr1	223104404	223148248
TLR6_chr4_38817897_38861817	0/1	c0001	2391	175	12	30	109	4	19	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0002	2391	107	37	11	45	1	13	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	1/0	c0003	2391	23	2	14	0	5	1	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0004	2391	21	5	0	15	0	1	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0005	2391	21	4	8	2	2	5	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0006	2391	13	0	0	13	0	0	copy fasta	TLR6	chr4	38817897	38861817