JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TLR6_chr4_38817897_38861817	0/0	c0007	2391	12	11	1	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0008	2391	10	1	7	1	0	1	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0009	2391	6	5	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0010	2391	5	2	1	1	0	1	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0011	2391	3	3	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0012	2391	2	2	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0013	2391	2	0	0	0	0	2	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0014	2391	2	0	0	0	0	2	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0015	2391	1	0	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0016	2391	1	1	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0017	2391	1	1	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0018	2391	1	0	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0019	2391	1	0	0	0	0	1	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	c0020	2391	1	0	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR7_chrX_12862072_12895361	1/1	c0001	3150	246	31	34	144	7	28	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	c0002	3150	27	19	6	1	0	1	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	c0003	3150	21	9	10	0	1	1	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	c0004	3150	18	14	4	0	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	c0005	3152	1	0	0	1	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	c0006	3150	1	0	0	1	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	c0007	3150	1	1	0	0	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	c0008	3148	1	0	0	1	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	c0009	3150	1	1	0	0	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	c0010	3150	1	0	0	0	0	1	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	c0011	3150	1	0	0	0	1	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	c0012	3150	1	1	0	0	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	c0013	3150	1	0	0	0	0	1	copy fasta	TLR7	chrX	12862072	12895361
TLR8_chrX_12901620_12928169	0/0	c0001	3126	110	6	13	78	2	11	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	1/1	c0002	3126	54	2	12	22	4	12	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0003	3126	25	9	11	2	1	2	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0004	3126	25	1	14	7	1	2	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0005	3126	20	18	2	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0006	3126	14	5	1	6	0	2	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0007	3126	12	5	1	4	0	2	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0008	3126	6	5	1	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0009	3126	5	2	3	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0010	3126	5	4	1	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0011	3126	4	4	0	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0012	3126	3	3	0	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0013	3126	3	3	0	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0014	3126	3	3	0	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0015	3126	2	1	0	0	1	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0016	3126	2	2	0	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0017	3126	2	0	0	2	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0018	3126	2	1	1	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0019	3126	1	0	0	1	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0020	3126	1	0	0	1	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0021	3126	1	1	0	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0022	3126	1	1	0	0	0	0	copy fasta	TLR8	chrX	12901620	12928169
TLR8_chrX_12901620_12928169	0/0	c0023	3126	1	0	0	1	0	0	copy fasta	TLR8	chrX	12901620	12928169