JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BCAM_chr19_44804103_44826421	0/0	c0012	1887	2	0	2	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0013	1887	2	0	0	0	1	1	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0014	1887	1	0	0	1	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0015	1887	1	0	0	0	0	1	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0016	1887	1	0	0	0	1	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0017	1887	1	1	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0018	1887	1	1	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0019	1887	1	1	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0020	1887	1	0	0	1	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0021	1887	1	0	1	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0022	1887	1	0	0	0	0	1	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0023	1887	1	0	0	1	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0024	1887	1	1	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0025	1887	1	0	1	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0026	1887	1	0	0	1	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0027	1887	1	0	1	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0028	1887	1	0	0	1	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0029	1887	1	1	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0030	1887	1	1	0	0	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0031	1887	1	0	0	1	0	0	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0032	1887	1	0	0	0	0	1	copy fasta	BCAM	chr19	44804103	44826421
BCAM_chr19_44804103_44826421	0/0	c0033	1887	1	0	0	0	0	1	copy fasta	BCAM	chr19	44804103	44826421
BCAN_chr1_156637117_156664528	1/0	c0001	2736	216	49	42	99	10	15	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0002	2736	74	1	6	50	1	16	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/1	c0003	2736	73	9	28	15	7	13	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0004	2736	20	19	1	0	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0005	2736	10	0	0	8	0	2	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0006	2736	7	7	0	0	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0007	2736	4	4	0	0	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0008	2736	3	0	0	3	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0009	2736	3	3	0	0	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0010	2736	1	0	1	0	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0011	2736	1	1	0	0	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0012	2736	1	1	0	0	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0013	2736	1	0	0	0	0	1	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0014	2736	1	1	0	0	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0015	2736	1	0	0	0	0	1	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0016	2736	1	1	0	0	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0017	2736	1	0	0	0	0	1	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0018	2736	1	0	0	1	0	0	copy fasta	BCAN	chr1	156637117	156664528
BCAN_chr1_156637117_156664528	0/0	c0019	2736	1	0	0	0	0	1	copy fasta	BCAN	chr1	156637117	156664528
BCAP29_chr7_107575246_107625478	1/1	c0001	726	398	90	76	182	16	32	copy fasta	BCAP29	chr7	107575246	107625478
BCAP31_chrX_153695492_153729387	1/1	c0001	741	264	74	42	108	6	32	copy fasta	BCAP31	chrX	153695492	153729387
BCAP31_chrX_153695492_153729387	0/0	c0002	721	1	0	0	1	0	0	copy fasta	BCAP31	chrX	153695492	153729387
BCAP31_chrX_153695492_153729387	0/0	c0003	741	1	1	0	0	0	0	copy fasta	BCAP31	chrX	153695492	153729387
BCAP31_chrX_153695492_153729387	0/0	c0004	741	1	1	0	0	0	0	copy fasta	BCAP31	chrX	153695492	153729387
BCAR1_chr16_75223181_75256624	0/0	c0001	2613	111	4	15	69	3	20	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0002	2613	73	1	6	59	2	5	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0003	2613	73	12	24	23	7	7	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0004	2613	23	13	8	0	1	1	copy fasta	BCAR1	chr16	75223181	75256624