JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TM4SF4_chr3_149469697_149508394	0/0	c0010	609	1	0	0	1	0	0	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	c0011	609	1	1	0	0	0	0	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF5_chr17_4766886_4788211	1/0	c0001	594	229	53	45	111	9	10	copy fasta	TM4SF5	chr17	4766886	4788211
TM4SF5_chr17_4766886_4788211	0/0	c0002	594	116	24	6	65	2	19	copy fasta	TM4SF5	chr17	4766886	4788211
TM4SF5_chr17_4766886_4788211	0/0	c0003	594	65	14	7	35	3	6	copy fasta	TM4SF5	chr17	4766886	4788211
TM4SF5_chr17_4766886_4788211	0/1	c0004	594	39	1	14	8	4	11	copy fasta	TM4SF5	chr17	4766886	4788211
TM4SF5_chr17_4766886_4788211	0/0	c0005	594	2	2	0	0	0	0	copy fasta	TM4SF5	chr17	4766886	4788211
TM4SF5_chr17_4766886_4788211	0/0	c0006	594	2	0	0	0	0	2	copy fasta	TM4SF5	chr17	4766886	4788211
TM4SF5_chr17_4766886_4788211	0/0	c0007	594	1	0	0	1	0	0	copy fasta	TM4SF5	chr17	4766886	4788211
TM6SF1_chr15_83102645_83142408	1/1	c0001	1113	269	90	55	86	7	29	copy fasta	TM6SF1	chr15	83102645	83142408
TM6SF1_chr15_83102645_83142408	0/0	c0002	1113	12	0	6	0	2	4	copy fasta	TM6SF1	chr15	83102645	83142408
TM6SF1_chr15_83102645_83142408	0/0	c0003	1113	5	0	3	0	1	1	copy fasta	TM6SF1	chr15	83102645	83142408
TM6SF1_chr15_83102645_83142408	0/0	c0004	1113	4	0	0	4	0	0	copy fasta	TM6SF1	chr15	83102645	83142408
TM6SF2_chr19_19259366_19278301	1/0	c0001	1134	249	68	43	96	13	28	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	c0002	1134	103	16	19	51	2	15	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	c0003	1134	27	3	6	13	2	3	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	c0004	1134	6	6	0	0	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	c0005	1134	3	0	3	0	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	c0006	1134	2	0	1	0	1	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	c0007	1134	1	0	1	0	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/1	c0008	1134	1	0	0	0	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	c0009	1134	1	1	0	0	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	c0010	1134	1	0	0	1	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	c0011	1134	1	0	1	0	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	c0012	1134	1	0	0	1	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM7SF2_chr11_65106872_65121230	0/0	c0001	1257	223	58	35	96	7	27	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	0/1	c0002	1257	107	20	32	38	8	8	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	0/0	c0003	1257	16	6	1	8	0	1	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	0/0	c0004	1257	15	0	3	9	1	2	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	0/0	c0005	1257	4	0	0	4	0	0	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	0/0	c0006	1257	4	3	1	0	0	0	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	1/0	c0007	1257	4	3	0	0	0	0	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	0/0	c0008	1257	4	4	0	0	0	0	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	0/0	c0009	1257	1	0	0	0	0	1	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	0/0	c0010	1257	1	0	0	0	0	1	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	0/0	c0011	1257	1	0	0	1	0	0	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF3_chr12_26966579_27019384	1/1	c0001	1713	379	73	64	179	16	45	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	c0002	1713	31	2	7	22	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	c0003	1713	9	9	0	0	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	c0004	1713	3	0	1	0	0	2	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	c0005	1713	2	0	0	2	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	c0006	1713	2	2	0	0	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	c0007	1713	1	0	0	0	0	1	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	c0008	1713	1	0	0	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	c0009	1713	1	0	0	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	c0010	1713	1	0	0	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM9SF1_chr14_24184149_24200441	1/1	c0001	1821	405	81	62	204	13	43	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	c0002	1821	16	1	9	0	3	3	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	c0003	1821	4	4	0	0	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	c0004	1821	3	3	0	0	0	0	copy fasta	TM9SF1	chr14	24184149	24200441