JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TM9SF1_chr14_24184149_24200441	0/0	c0005	1821	2	0	0	2	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	c0006	1821	1	0	1	0	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	c0007	1821	1	0	1	0	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	c0008	1821	1	1	0	0	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	c0009	1821	1	0	1	0	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF2_chr13_99496472_99569048	1/1	c0001	1992	323	78	52	137	18	36	copy fasta	TM9SF2	chr13	99496472	99569048
TM9SF2_chr13_99496472_99569048	0/0	c0002	1992	7	7	0	0	0	0	copy fasta	TM9SF2	chr13	99496472	99569048
TM9SF2_chr13_99496472_99569048	0/0	c0003	1992	1	1	0	0	0	0	copy fasta	TM9SF2	chr13	99496472	99569048
TM9SF2_chr13_99496472_99569048	0/0	c0004	1992	1	0	0	1	0	0	copy fasta	TM9SF2	chr13	99496472	99569048
TM9SF3_chr10_96513110_96592012	1/1	c0001	1770	258	63	41	109	11	32	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	c0002	1770	82	25	14	34	3	6	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	c0003	1770	3	3	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	c0004	1770	1	1	0	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	c0005	1770	1	0	0	1	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	c0006	1770	1	0	0	1	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	c0007	1770	1	0	0	1	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	c0008	1770	1	0	1	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF4_chr20_32104714_32172256	1/1	c0001	1929	284	87	56	101	12	26	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	c0002	1929	5	5	0	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	c0003	1929	3	0	3	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	c0004	1929	2	1	1	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	c0005	1929	1	1	0	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	c0006	1929	1	0	1	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	c0007	1929	1	0	1	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	c0008	1929	1	0	0	1	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TMA16_chr4_163489690_163525539	1/0	c0001	612	266	57	33	131	8	36	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/1	c0002	612	139	24	32	67	8	7	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	c0003	612	8	7	1	0	0	0	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	c0004	612	5	0	0	5	0	0	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	c0005	612	3	2	0	0	0	1	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	c0006	612	1	0	0	1	0	0	copy fasta	TMA16	chr4	163489690	163525539
TMA7B_chr22_39955397_39969905	1/1	c0001	195	426	94	82	186	16	46	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	c0002	195	1	0	0	1	0	0	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	c0003	195	1	0	0	1	0	0	copy fasta	TMA7B	chr22	39955397	39969905
TMA7_chr3_48435257_48449208	0/0	c0001	195	389	88	72	175	16	38	copy fasta	TMA7	chr3	48435257	48449208
TMA7_chr3_48435257_48449208	0/0	c0002	158	1	0	0	1	0	0	copy fasta	TMA7	chr3	48435257	48449208
TMBIM1_chr2_218269197_218297503	0/0	c0001	936	145	7	36	76	7	19	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/1	c0002	936	131	17	28	65	7	13	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	c0003	936	57	54	3	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	c0004	936	7	3	2	1	1	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	1/0	c0005	936	6	5	0	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	c0006	936	1	0	0	1	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	c0007	936	1	1	0	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	c0008	936	1	1	0	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	c0009	936	1	0	1	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	c0010	936	1	0	0	0	0	1	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	c0011	936	1	0	0	0	1	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	c0012	936	1	0	0	1	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	c0013	936	1	0	0	0	0	1	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	c0014	936	1	0	1	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503