JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMBIM1_chr2_218269197_218297503	0/0	c0015	936	1	0	1	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM4_chr12_66130846_66174996	0/0	c0001	717	193	25	18	128	4	18	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	1/1	c0002	717	156	57	43	20	12	22	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	c0003	717	2	2	0	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	0/0	c0004	717	1	0	1	0	0	0	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM6_chr12_49736557_49769934	1/1	c0001	714	226	29	51	112	10	22	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	c0002	714	65	41	8	12	2	2	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	c0003	714	8	7	1	0	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	c0004	714	4	0	0	4	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	c0005	714	1	1	0	0	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMC1_chr9_72516608_72843297	1/1	c0001	2283	75	15	18	28	3	9	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	c0002	2283	54	13	11	24	1	5	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	c0003	2283	44	29	10	4	1	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	c0004	2283	6	0	3	2	1	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	c0005	2283	1	0	0	0	0	1	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	c0006	2283	1	0	0	0	0	1	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	c0007	2283	1	1	0	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC2_chr20_2531573_2648580	0/1	c0001	2721	67	12	12	29	2	11	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0002	2721	65	12	15	35	2	1	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0003	2721	40	2	12	14	1	11	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	1/0	c0004	2721	33	1	7	20	3	1	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0005	2721	18	3	4	9	1	1	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0006	2721	17	1	1	10	1	4	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0007	2721	11	3	0	3	3	2	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0008	2721	11	1	2	6	0	2	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0009	2718	6	0	0	6	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0010	2721	5	3	1	0	0	1	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0011	2721	5	2	0	1	1	1	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0012	2718	5	0	0	5	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0013	2721	4	3	1	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0014	2721	3	3	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0015	2721	3	3	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0016	2721	3	3	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0017	2721	3	0	1	2	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0018	2721	2	0	0	1	1	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0019	2721	2	2	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0020	2721	2	2	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0021	2721	2	2	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0022	2721	2	2	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0023	2721	2	1	0	0	0	1	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0024	2721	2	2	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0025	2721	2	2	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0026	2721	1	0	0	1	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0027	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0028	2721	1	0	1	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0029	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0030	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0031	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0032	2721	1	0	0	1	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0033	2721	1	0	0	1	0	0	copy fasta	TMC2	chr20	2531573	2648580