JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMC2_chr20_2531573_2648580	0/0	c0034	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0035	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0036	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0037	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0038	2721	1	0	0	1	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0039	2721	1	0	0	0	0	1	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0040	2721	1	0	0	0	1	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0041	2721	1	0	1	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0042	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0043	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0044	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0045	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0046	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0047	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0048	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0049	2721	1	0	0	1	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0050	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0051	2721	1	0	0	0	0	1	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0052	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0053	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	c0054	2721	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC3_chr15_81326088_81379213	0/1	c0001	3303	136	15	29	73	9	9	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	1/0	c0002	3303	72	10	10	39	1	11	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0003	3303	55	34	7	12	2	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0004	3303	29	1	4	22	0	2	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0005	3303	21	0	0	21	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0006	3303	12	1	0	8	0	3	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0007	3303	6	6	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0008	3303	6	3	2	0	0	1	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0009	3303	5	4	1	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0010	3303	4	3	1	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0011	3303	4	0	1	3	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0012	3303	3	3	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0013	3303	3	2	1	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0014	3303	3	0	3	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0015	3303	3	3	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0016	3303	3	3	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0017	3303	2	2	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0018	3303	2	0	0	2	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0019	3303	2	0	0	2	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0020	3303	1	0	0	1	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0021	3303	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0022	3303	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0023	3303	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0024	3303	1	0	0	1	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0025	3303	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0026	3303	1	0	0	1	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0027	3303	1	0	0	0	0	1	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0028	3303	1	0	0	0	1	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0029	3303	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213