JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMC3_chr15_81326088_81379213	0/0	c0030	3303	1	0	1	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0031	3303	1	0	0	0	1	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0032	3303	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0033	3303	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0034	3303	1	0	0	1	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0035	3303	1	0	0	0	0	1	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0036	3303	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0037	3303	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	c0038	3303	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC4_chr19_54155108_54178160	0/0	c0001	2121	179	26	44	87	8	14	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0002	2121	68	12	17	20	4	15	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0003	2121	34	14	7	8	0	5	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/1	c0004	2121	30	9	4	7	1	8	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0005	2121	27	13	5	6	3	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0006	2118	15	0	1	14	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0007	2121	12	5	1	6	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0008	2121	9	7	0	1	0	1	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0009	2121	7	2	1	2	0	2	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0010	2121	3	2	0	0	1	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0011	2121	3	0	2	0	1	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0012	2121	3	0	0	3	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0013	2121	3	0	0	3	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0014	2121	2	0	0	2	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0015	2121	1	1	0	0	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0016	2121	1	0	0	1	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0017	2121	1	1	0	0	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0018	2121	1	1	0	0	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0019	2121	1	1	0	0	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0020	2118	1	0	0	1	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0021	2121	1	0	0	1	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0022	2121	1	0	0	0	0	1	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0023	2121	1	1	0	0	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0024	2121	1	1	0	0	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0025	2121	1	1	0	0	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	c0026	2121	1	1	0	0	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC5_chr16_19412883_19504113	1/0	c0001	3021	271	82	52	110	7	19	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/1	c0002	3021	36	0	3	25	0	7	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0003	3021	4	2	1	0	1	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0004	3021	2	2	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0005	3021	2	2	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0006	3021	2	0	0	0	0	2	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0007	3021	2	0	0	0	0	2	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0008	3021	2	0	0	2	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0009	3021	2	0	2	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0010	3021	1	0	1	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0011	3021	1	0	0	1	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0012	3021	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0013	3021	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0014	3021	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0015	3021	1	0	0	1	0	0	copy fasta	TMC5	chr16	19412883	19504113