JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMC5_chr16_19412883_19504113	0/0	c0016	3021	1	0	0	1	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0017	3021	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0018	3021	1	0	1	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0019	3021	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0020	3021	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0021	3021	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	c0022	3021	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC6_chr17_78102397_78133755	1/1	c0001	2418	144	30	31	52	8	21	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0002	2418	66	20	19	12	4	11	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0003	2418	63	3	15	42	1	2	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0004	2418	40	8	2	27	0	3	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0005	2418	37	1	10	17	3	6	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0006	2418	35	14	2	16	1	2	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0007	2418	6	6	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0008	2418	6	0	0	5	0	1	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0009	2418	5	0	0	4	0	1	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0010	2418	4	0	0	4	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0011	2418	3	0	0	3	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0012	2418	3	2	1	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0013	2418	3	3	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0014	2418	2	0	1	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0015	2418	2	2	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0016	2418	2	0	0	2	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0017	2418	2	0	0	2	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0018	2418	2	2	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0019	2418	1	0	0	0	0	1	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0020	2418	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0021	2418	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0022	2418	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0023	2418	1	0	1	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0024	2418	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0025	2418	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0026	2418	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0027	2418	1	0	0	0	1	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0028	2418	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0029	2418	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0030	2418	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0031	2418	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0032	2418	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0033	2418	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0034	2418	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0035	2418	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0036	2460	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	c0037	2418	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC7_chr16_18978934_19068942	1/1	c0001	2172	128	57	23	26	4	16	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	c0002	2172	96	7	23	46	4	16	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	c0003	2172	28	6	5	14	0	3	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	c0004	2172	5	5	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	c0005	2172	5	0	1	4	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	c0006	2172	4	2	2	0	0	0	copy fasta	TMC7	chr16	18978934	19068942