JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMC7_chr16_18978934_19068942	0/0	c0007	2172	3	3	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	c0008	2172	2	2	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	c0009	2172	2	0	2	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	c0010	2172	1	0	1	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	c0011	2172	1	1	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	c0012	2172	1	1	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	c0013	2172	1	0	0	1	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	c0014	2172	1	0	1	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	c0015	2172	1	0	0	0	1	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	c0016	2172	1	0	0	1	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	c0017	2172	1	0	0	0	0	1	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	c0018	2172	1	0	0	0	1	0	copy fasta	TMC7	chr16	18978934	19068942
TMC8_chr17_78125771_78147968	0/0	c0001	2181	204	48	46	83	7	20	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	1/0	c0002	2181	139	10	17	95	5	11	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0003	2181	36	15	1	15	2	3	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0004	2181	35	11	11	6	2	5	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0005	2181	3	0	1	0	0	2	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0006	2181	3	3	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0007	2181	3	0	3	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0008	2181	3	0	0	0	0	3	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0009	2181	3	3	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0010	2181	2	0	1	0	0	1	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0011	2181	2	0	0	0	0	2	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0012	2181	2	2	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0013	2181	2	2	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0014	2181	2	1	0	0	0	1	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0015	2181	1	0	1	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/1	c0016	2181	1	0	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0017	2181	1	0	1	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0018	2181	1	0	0	0	1	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0019	2181	1	1	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0020	2181	1	0	0	1	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0021	2181	1	0	1	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0022	2181	1	0	0	1	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0023	2181	1	0	0	1	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0024	2181	1	1	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0025	2181	1	0	1	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0026	2181	1	1	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0027	2181	1	0	0	0	0	1	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0028	2181	1	0	0	0	1	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	c0029	2181	1	0	0	0	0	1	copy fasta	TMC8	chr17	78125771	78147968
TMCC1_chr3_129642792_129898711	0/1	c0001	1962	211	47	33	98	9	23	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	c0002	1962	28	16	8	0	1	3	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	1/0	c0003	1962	14	11	1	1	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	c0004	1962	2	0	0	0	0	2	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	c0005	1962	1	0	0	1	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	c0006	1962	1	0	0	1	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	c0007	1962	1	0	0	1	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC2_chr1_205222946_205278343	1/0	c0001	2130	283	72	42	121	13	34	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/1	c0002	2130	37	2	16	8	5	5	copy fasta	TMCC2	chr1	205222946	205278343