JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMCC2_chr1_205222946_205278343	0/0	c0003	2130	17	0	2	13	0	2	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	c0004	2130	8	7	1	0	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	c0005	2130	4	4	0	0	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	c0006	2130	4	2	2	0	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	c0007	2130	4	0	0	4	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	c0008	2130	3	3	0	0	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	c0009	2130	2	2	0	0	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	c0010	2130	2	0	0	2	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	c0011	2130	1	0	0	1	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	c0012	2130	1	0	0	1	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	c0013	2130	1	0	1	0	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	c0014	2130	1	0	1	0	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	c0015	2130	1	0	0	0	0	1	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	c0016	2130	1	0	0	1	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	c0017	2130	1	0	0	1	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	c0018	2130	1	0	1	0	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC3_chr12_94562122_94655557	0/1	c0001	1434	105	17	21	52	4	10	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0002	1434	104	7	24	54	11	8	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0003	1434	68	27	16	17	1	7	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0004	1434	57	26	3	18	0	10	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0005	1434	7	3	3	0	0	1	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0006	1434	4	0	1	2	0	1	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0007	1434	3	3	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0008	1434	3	3	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0009	1434	3	3	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	1/0	c0010	1434	3	1	0	1	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0011	1434	2	0	2	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0012	1434	2	2	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0013	1434	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0014	1434	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0015	1434	1	0	0	1	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0016	1434	1	0	0	0	0	1	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0017	1434	1	0	0	0	0	1	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0018	1434	1	0	0	1	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0019	1434	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0020	1434	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0021	1434	1	0	0	1	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0022	1434	1	0	0	1	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0023	1434	1	0	0	0	0	1	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0024	1434	1	0	1	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0025	1434	1	0	0	1	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0026	1434	1	0	1	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0027	1434	1	0	1	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0028	1434	1	0	0	1	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	c0029	1434	1	0	1	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCO1_chr1_165721795_165773868	1/1	c0001	567	366	83	69	150	16	46	copy fasta	TMCO1	chr1	165721795	165773868
TMCO1_chr1_165721795_165773868	0/0	c0002	567	7	0	7	0	0	0	copy fasta	TMCO1	chr1	165721795	165773868
TMCO1_chr1_165721795_165773868	0/0	c0003	567	1	1	0	0	0	0	copy fasta	TMCO1	chr1	165721795	165773868
TMCO2_chr1_40242937_40256684	1/1	c0001	549	412	86	62	200	16	46	copy fasta	TMCO2	chr1	40242937	40256684
TMCO2_chr1_40242937_40256684	0/0	c0002	549	5	1	4	0	0	0	copy fasta	TMCO2	chr1	40242937	40256684