JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BCAR1_chr16_75223181_75256624	0/0	c0005	2613	23	20	3	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	1/1	c0006	2613	11	2	3	1	0	3	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0007	2613	10	7	3	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0008	2613	10	0	5	0	1	4	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0009	2613	7	7	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0010	2613	5	5	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0011	2613	4	0	0	0	0	4	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0012	2613	3	3	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0013	2613	2	2	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0014	2613	2	2	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0015	2613	2	1	1	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0016	2613	2	2	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0017	2613	2	0	0	2	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0018	2613	2	2	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0019	2613	2	0	2	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0020	2613	2	2	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0021	2613	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0022	2613	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0023	2613	1	0	1	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0024	2613	1	1	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0025	2613	1	1	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0026	2613	1	0	0	0	0	1	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0027	2613	1	1	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0028	2613	1	1	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0029	2613	1	1	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0030	2613	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0031	2613	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0032	2613	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0033	2613	1	0	1	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0034	2613	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0035	2613	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0036	2613	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0037	2613	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0038	2613	1	0	0	0	1	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0039	2613	1	1	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0040	2613	1	1	0	0	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0041	2613	1	0	0	0	0	1	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0042	2613	1	0	0	0	1	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR1_chr16_75223181_75256624	0/0	c0043	2613	1	0	0	1	0	0	copy fasta	BCAR1	chr16	75223181	75256624
BCAR3_chr1_93556741_93686837	1/1	c0001	2478	134	42	33	44	2	11	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0002	2478	26	5	1	16	2	2	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0003	2478	7	7	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0004	2478	6	5	1	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0005	2478	5	3	2	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0006	2478	4	4	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0007	2478	2	2	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0008	2478	2	0	0	0	1	1	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0009	2478	2	2	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0010	2478	2	2	0	0	0	0	copy fasta	BCAR3	chr1	93556741	93686837
BCAR3_chr1_93556741_93686837	0/0	c0011	2478	1	0	0	1	0	0	copy fasta	BCAR3	chr1	93556741	93686837