JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMCO2_chr1_40242937_40256684	0/0	c0003	549	4	4	0	0	0	0	copy fasta	TMCO2	chr1	40242937	40256684
TMCO2_chr1_40242937_40256684	0/0	c0004	549	2	0	2	0	0	0	copy fasta	TMCO2	chr1	40242937	40256684
TMCO2_chr1_40242937_40256684	0/0	c0005	549	2	1	0	0	1	0	copy fasta	TMCO2	chr1	40242937	40256684
TMCO2_chr1_40242937_40256684	0/0	c0006	549	1	0	0	0	1	0	copy fasta	TMCO2	chr1	40242937	40256684
TMCO3_chr13_113486021_113555229	1/1	c0001	2034	163	18	36	82	8	17	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0002	2034	71	27	12	24	2	6	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0003	2034	51	6	14	26	0	5	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0004	2034	23	13	1	3	1	5	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0005	2034	17	7	6	0	2	2	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0006	2034	17	0	1	14	1	1	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0007	2034	4	4	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0008	2034	3	3	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0009	2034	3	3	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0010	2034	2	0	0	2	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0011	2034	2	0	0	2	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0012	2034	1	0	1	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0013	2034	1	0	0	1	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0014	2034	1	1	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0015	2034	1	1	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0016	2034	1	0	1	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0017	2034	1	1	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0018	2034	1	1	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0019	2034	1	0	0	1	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0020	2034	1	1	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0021	2034	1	0	0	1	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0022	2034	1	0	0	1	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	c0023	2034	1	0	0	1	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO4_chr1_19677240_19804916	0/0	c0001	1905	67	13	17	19	4	14	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	1/0	c0002	1905	52	14	9	24	1	3	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0003	1905	33	4	4	15	1	9	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/1	c0004	1905	30	11	5	11	0	2	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0005	1905	21	4	5	7	0	5	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0006	1905	17	11	1	5	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0007	1905	14	1	4	8	1	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0008	1905	11	6	1	3	0	1	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0009	1905	9	2	4	0	0	3	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0010	1905	7	0	2	5	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0011	1905	4	3	0	0	0	1	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0012	1905	4	4	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0013	1905	3	0	1	2	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0014	1905	3	3	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0015	1905	3	0	1	0	2	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0016	1905	3	2	1	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0017	1905	2	0	0	2	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0018	1905	2	0	0	1	0	1	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0019	1905	2	2	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0020	1905	2	2	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0021	1905	1	0	1	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0022	1905	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0023	1905	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916