JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMCO4_chr1_19677240_19804916	0/0	c0024	1905	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0025	1905	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0026	1905	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0027	1905	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0028	1905	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0029	1905	1	0	1	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0030	1905	1	0	1	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0031	1905	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0032	1905	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0033	1905	1	0	0	0	0	1	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0034	1905	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0035	1905	1	0	0	0	0	1	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0036	1905	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0037	1905	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0038	1905	1	0	0	0	1	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0039	1905	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0040	1905	1	0	0	0	0	1	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0041	1905	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0042	1905	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	c0043	1905	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO5A_chr15_37929640_37956422	1/1	c0001	867	347	84	73	142	15	31	copy fasta	TMCO5A	chr15	37929640	37956422
TMCO5A_chr15_37929640_37956422	0/0	c0002	867	4	4	0	0	0	0	copy fasta	TMCO5A	chr15	37929640	37956422
TMCO5A_chr15_37929640_37956422	0/0	c0003	867	4	0	1	0	0	3	copy fasta	TMCO5A	chr15	37929640	37956422
TMCO5A_chr15_37929640_37956422	0/0	c0004	867	2	0	0	2	0	0	copy fasta	TMCO5A	chr15	37929640	37956422
TMCO5A_chr15_37929640_37956422	0/0	c0005	867	1	1	0	0	0	0	copy fasta	TMCO5A	chr15	37929640	37956422
TMCO5A_chr15_37929640_37956422	0/0	c0006	867	1	1	0	0	0	0	copy fasta	TMCO5A	chr15	37929640	37956422
TMCO5A_chr15_37929640_37956422	0/0	c0007	867	1	0	0	0	1	0	copy fasta	TMCO5A	chr15	37929640	37956422
TMCO6_chr5_140634451_140650404	1/0	c0001	1482	276	79	40	117	10	29	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/1	c0002	1482	99	4	12	65	7	10	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	c0003	1482	14	10	3	1	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	c0004	1482	4	0	0	4	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	c0005	1482	4	0	2	1	0	1	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	c0006	1482	2	1	1	0	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	c0007	1482	1	0	0	1	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	c0008	1482	1	0	0	1	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	c0009	1482	1	1	0	0	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	c0010	1482	1	1	0	0	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	c0011	1482	1	0	0	1	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	c0012	1505	1	0	0	1	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	c0013	1482	1	0	0	0	1	0	copy fasta	TMCO6	chr5	140634451	140650404
TMDD1_chr12_51808921_51819925	0/1	c0001	960	214	56	39	84	11	23	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	c0002	960	102	2	9	78	4	9	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	1/0	c0003	954	38	11	7	3	1	15	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	c0004	960	9	9	0	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	c0005	960	6	5	1	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	c0006	960	6	6	0	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	c0007	954	4	0	3	0	0	1	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	c0008	960	4	0	0	4	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	c0009	954	2	2	0	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	c0010	954	1	1	0	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925