JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMDD1_chr12_51808921_51819925	0/0	c0011	960	1	0	0	1	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	c0012	960	1	0	1	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	c0013	960	1	0	0	1	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	c0014	954	1	1	0	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	c0015	960	1	0	0	1	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	c0016	960	1	1	0	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	c0017	960	1	1	0	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	c0018	960	1	1	0	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMED10_chr14_75126469_75181612	1/1	c0001	660	242	72	46	85	8	29	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	c0002	660	19	14	2	0	0	3	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	c0003	660	1	0	0	1	0	0	copy fasta	TMED10	chr14	75126469	75181612
TMED1_chr19_10827067_10841212	1/1	c0001	684	397	88	64	186	16	41	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	c0002	684	1	1	0	0	0	0	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	c0003	684	1	0	0	0	0	1	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	c0004	684	1	1	0	0	0	0	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	c0005	684	1	0	0	1	0	0	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	c0006	684	1	0	0	1	0	0	copy fasta	TMED1	chr19	10827067	10841212
TMED2_chr12_123579552_123603582	0/1	c0001	606	265	88	64	62	18	32	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	c0002	606	13	0	0	13	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	1/0	c0003	606	5	4	0	0	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED2_chr12_123579552_123603582	0/0	c0004	606	1	0	0	1	0	0	copy fasta	TMED2	chr12	123579552	123603582
TMED3_chr15_79306112_79327840	0/1	c0001	654	413	83	74	189	18	48	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	c0002	654	7	0	2	5	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	c0003	654	5	0	5	0	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	c0004	654	5	5	0	0	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	c0005	654	5	0	1	4	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	1/0	c0006	654	4	3	0	0	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	c0007	654	3	3	0	0	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	c0008	654	1	0	1	0	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	c0009	654	1	0	1	0	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED4_chr7_44572894_44587231	0/1	c0001	684	327	87	57	141	10	31	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	1/0	c0002	684	70	7	21	24	6	11	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	c0003	684	4	4	0	0	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	c0004	684	1	0	0	1	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED5_chr1_93144742_93185413	1/0	c0001	690	217	81	36	76	9	14	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/1	c0002	690	124	5	31	64	7	16	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	c0003	690	2	2	0	0	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	c0004	690	1	0	1	0	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED6_chr16_69338250_69356786	1/1	c0001	723	369	81	65	166	11	44	copy fasta	TMED6	chr16	69338250	69356786
TMED6_chr16_69338250_69356786	0/0	c0002	723	21	10	3	6	1	1	copy fasta	TMED6	chr16	69338250	69356786
TMED6_chr16_69338250_69356786	0/0	c0003	723	11	0	5	0	5	1	copy fasta	TMED6	chr16	69338250	69356786
TMED6_chr16_69338250_69356786	0/0	c0004	723	5	1	3	0	1	0	copy fasta	TMED6	chr16	69338250	69356786
TMED6_chr16_69338250_69356786	0/0	c0005	723	2	2	0	0	0	0	copy fasta	TMED6	chr16	69338250	69356786
TMED6_chr16_69338250_69356786	0/0	c0006	723	1	0	0	1	0	0	copy fasta	TMED6	chr16	69338250	69356786
TMED6_chr16_69338250_69356786	0/0	c0007	723	1	0	0	1	0	0	copy fasta	TMED6	chr16	69338250	69356786
TMED7_chr5_115608210_115631036	1/1	c0001	675	380	93	56	169	14	46	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	c0002	675	2	0	2	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	c0003	675	2	0	2	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	c0004	675	1	1	0	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	c0005	675	1	0	0	1	0	0	copy fasta	TMED7	chr5	115608210	115631036