JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMED8_chr14_77330029_77382094	1/1	c0001	978	207	36	34	119	4	12	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	c0002	978	61	33	8	5	5	10	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	c0003	978	49	11	18	1	7	12	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	c0004	978	3	2	1	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	c0005	978	2	1	1	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	c0006	978	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	c0007	978	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	c0008	978	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	c0009	978	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	c0010	978	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	c0011	978	1	0	0	1	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED9_chr5_177587203_177602242	1/1	c0001	708	427	93	74	193	17	48	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	c0002	708	9	4	4	0	1	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	c0003	708	1	0	0	1	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	c0004	708	1	1	0	0	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMEFF1_chr9_100468149_100582636	1/0	c0001	1143	210	57	33	80	10	29	copy fasta	TMEFF1	chr9	100468149	100582636
TMEFF1_chr9_100468149_100582636	0/1	c0002	1143	25	8	11	0	2	3	copy fasta	TMEFF1	chr9	100468149	100582636
TMEFF1_chr9_100468149_100582636	0/0	c0003	1143	7	7	0	0	0	0	copy fasta	TMEFF1	chr9	100468149	100582636
TMEFF2_chr2_191944046_192199933	1/1	c0001	1125	159	67	34	40	6	10	copy fasta	TMEFF2	chr2	191944046	192199933
TMEFF2_chr2_191944046_192199933	0/0	c0002	1125	3	3	0	0	0	0	copy fasta	TMEFF2	chr2	191944046	192199933
TMEFF2_chr2_191944046_192199933	0/0	c0003	1125	2	2	0	0	0	0	copy fasta	TMEFF2	chr2	191944046	192199933
TMEM100_chr17_55714627_55727864	1/1	c0001	405	425	96	80	199	14	34	copy fasta	TMEM100	chr17	55714627	55727864
TMEM100_chr17_55714627_55727864	0/0	c0002	405	3	0	0	3	0	0	copy fasta	TMEM100	chr17	55714627	55727864
TMEM101_chr17_44006188_44019963	1/1	c0001	774	371	86	72	163	10	38	copy fasta	TMEM101	chr17	44006188	44019963
TMEM101_chr17_44006188_44019963	0/0	c0002	774	4	4	0	0	0	0	copy fasta	TMEM101	chr17	44006188	44019963
TMEM101_chr17_44006188_44019963	0/0	c0003	774	1	0	0	1	0	0	copy fasta	TMEM101	chr17	44006188	44019963
TMEM102_chr17_7430435_7442679	1/1	c0001	1527	331	78	73	125	16	37	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	c0002	1527	12	11	1	0	0	0	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	c0003	1527	7	7	0	0	0	0	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	c0004	1527	6	0	0	6	0	0	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	c0005	1527	3	0	0	3	0	0	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	c0006	1527	1	0	0	1	0	0	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	c0007	1527	1	0	0	0	0	1	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	c0008	1527	1	0	0	1	0	0	copy fasta	TMEM102	chr17	7430435	7442679
TMEM104_chr17_74771499_74844753	0/1	c0001	1491	144	45	30	43	7	18	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	1/0	c0002	1491	113	17	21	45	7	22	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0003	1491	9	0	7	2	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0004	1491	8	7	1	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0005	1491	8	7	1	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0006	1491	3	0	0	3	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0007	1491	3	3	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0008	1491	2	2	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0009	1491	2	0	0	2	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0010	1491	1	1	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0011	1491	1	0	1	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0012	1491	1	0	0	1	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0013	1491	1	0	0	0	0	1	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0014	1491	1	1	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0015	1491	1	0	0	1	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0016	1491	1	0	0	1	0	0	copy fasta	TMEM104	chr17	74771499	74844753