JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMEM104_chr17_74771499_74844753	0/0	c0017	1491	1	0	0	1	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0018	1491	1	0	0	0	0	1	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0019	1491	1	0	0	1	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0020	1491	1	0	1	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	c0021	1491	1	1	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM106A_chr17_43206875_43225041	1/1	c0001	789	372	93	76	146	14	41	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	c0002	789	1	1	0	0	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	c0003	777	1	0	0	0	0	1	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106B_chr7_12206294_12248367	0/1	c0001	825	255	71	34	114	7	28	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	1/0	c0002	825	141	25	34	62	9	10	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	c0003	825	2	0	2	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106C_chr12_47958596_47973878	1/0	c0001	753	269	64	51	108	13	32	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/1	c0002	753	104	0	15	77	2	9	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	c0003	753	22	17	2	0	0	3	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	c0004	753	8	6	2	0	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	c0005	753	6	0	0	4	1	1	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	c0006	753	3	3	0	0	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	c0007	753	2	0	2	0	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	c0008	753	2	0	0	0	0	2	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	c0009	753	1	1	0	0	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	c0010	753	1	0	0	1	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	c0011	753	1	0	0	0	0	1	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	c0012	753	1	1	0	0	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	c0013	753	1	0	0	1	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	c0014	753	1	0	0	1	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM107_chr17_8167457_8181380	1/1	c0001	423	423	89	80	190	16	46	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	c0002	423	6	0	0	6	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM107_chr17_8167457_8181380	0/0	c0003	423	5	5	0	0	0	0	copy fasta	TMEM107	chr17	8167457	8181380
TMEM108_chr3_133033391_133402775	1/0	c0001	1728	126	53	19	35	5	13	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/1	c0002	1728	67	11	21	21	3	10	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	c0003	1728	8	5	3	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	c0004	1728	5	1	2	0	0	2	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	c0005	1728	4	0	1	2	0	1	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	c0006	1728	2	2	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	c0007	1728	1	0	0	1	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	c0008	1728	1	0	1	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	c0009	1728	1	1	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	c0010	1728	1	1	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	c0011	1728	1	1	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	c0012	1728	1	0	1	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	c0013	1728	1	1	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	c0014	1728	1	0	0	1	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM109_chr11_60909158_60928443	0/1	c0001	732	259	36	35	148	8	31	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	1/0	c0002	732	79	39	24	7	4	4	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	c0003	732	15	15	0	0	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	c0004	732	2	1	0	0	0	1	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	c0005	732	1	0	1	0	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	c0006	732	1	0	1	0	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	c0007	732	1	0	0	1	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	c0008	732	1	0	1	0	0	0	copy fasta	TMEM109	chr11	60909158	60928443